Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   UIB01_RS04680 Genome accession   NZ_CP007509
Coordinates   1021669..1022889 (+) Length   406 a.a.
NCBI ID   WP_038657335.1    Uniprot ID   -
Organism   Stutzerimonas decontaminans strain 19SMN4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016669..1027889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UIB01_RS04665 (UIB01_04730) cysN 1016676..1018574 (+) 1899 WP_038657329.1 sulfate adenylyltransferase subunit CysN -
  UIB01_RS04670 (UIB01_04735) pilA 1019210..1019632 (-) 423 WP_038657331.1 pilin Machinery gene
  UIB01_RS04675 (UIB01_04740) pilB 1019954..1021666 (+) 1713 WP_038657333.1 type IV-A pilus assembly ATPase PilB Machinery gene
  UIB01_RS04680 (UIB01_04745) pilC 1021669..1022889 (+) 1221 WP_038657335.1 type II secretion system F family protein Machinery gene
  UIB01_RS04685 (UIB01_04750) pilD 1022890..1023759 (+) 870 WP_038657337.1 A24 family peptidase Machinery gene
  UIB01_RS04690 (UIB01_04755) coaE 1023911..1024519 (+) 609 WP_038657340.1 dephospho-CoA kinase -
  UIB01_RS04695 (UIB01_04760) yacG 1024516..1024713 (+) 198 WP_038657341.1 DNA gyrase inhibitor YacG -
  UIB01_RS04700 (UIB01_04765) - 1024752..1025432 (-) 681 WP_038657343.1 energy-coupling factor ABC transporter permease -
  UIB01_RS04705 (UIB01_04770) - 1025499..1026536 (-) 1038 WP_038657345.1 NADP(H)-dependent aldo-keto reductase -
  UIB01_RS04710 (UIB01_04775) rplM 1026970..1027398 (+) 429 WP_038657347.1 50S ribosomal protein L13 -
  UIB01_RS04715 (UIB01_04780) rpsI 1027413..1027805 (+) 393 WP_003302797.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44226.72 Da        Isoelectric Point: 9.8272

>NTDB_id=120134 UIB01_RS04680 WP_038657335.1 1021669..1022889(+) (pilC) [Stutzerimonas decontaminans strain 19SMN4]
MTQKAIRTSVFAWEGIDRKGSKVKGELSGASPALVKAHLRKQGINPQKVRKKSVSIFSAGKKITPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQDVAAGNSFATSLRRKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQSVFNGFGAELPAFTLFVIKISEALQEWWYLILFGAAGMAFAFK
QAHVRSESFRNWVDKALLKTPIVGDIIYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATQKVKNDVSTGM
QLNFSMRTTSVFPSMAIQMTAIGEESGSLDEMLSKVATYYEDEVDNMVDGLTSLMEPIIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=120134 UIB01_RS04680 WP_038657335.1 1021669..1022889(+) (pilC) [Stutzerimonas decontaminans strain 19SMN4]
ATGACGCAGAAAGCGATCAGAACCAGTGTGTTCGCCTGGGAAGGCATCGACCGCAAAGGAAGTAAGGTCAAGGGTGAGCT
AAGTGGGGCTAGCCCTGCGCTGGTGAAGGCGCACTTGCGTAAGCAGGGTATCAACCCGCAGAAAGTTCGAAAGAAGTCGG
TGTCGATATTCAGCGCTGGAAAGAAAATCACGCCGATGGATATTGCGCTTTTCACTCGGCAAATGGCGACCATGATGAAG
GCTGGAGTGCCGCTGCTCCAATCATTCGATATCATTGGTGAGGGTTTTGACAATCCGAACATGCGGAAGCTCGTAGATGA
CTTGAAACAAGACGTTGCAGCGGGTAATAGTTTTGCAACGTCGCTGCGCAGGAAGCCACAGTATTTCGATGATCTCTACT
GCAATTTGGTGGATTCGGGGGAGCAGTCTGGTGCTCTGGAAACCCTATTGGATCGTGTGGCGACCTACAAGGAAAAGACA
GAGGCGTTGAAGGCAAAGATCAAGAAGGCGATGAACTACCCTATAGCTGTTGTGCTTGTGGCAATCATCGTTTCTGCGAT
CTTGTTGATAAAGGTGGTTCCTCAATTTCAGTCGGTTTTTAATGGTTTCGGTGCAGAGTTGCCGGCATTCACGCTGTTTG
TAATTAAAATATCTGAAGCGTTGCAAGAATGGTGGTACCTAATATTGTTTGGGGCCGCCGGTATGGCATTTGCGTTCAAG
CAGGCGCATGTGCGTTCTGAATCATTTAGGAATTGGGTGGATAAGGCGCTTCTAAAAACACCTATAGTGGGCGATATTAT
TTACAAGTCTTCTGTCGCTCGATTTGCACGGACGTTATCGACCACCTTTGCCGCGGGCGTTCCTCTCGTTGATGCTTTGG
ATTCCGTGGCTGGCGCAACCGGTAACGTGGTTTTTAGAAGTGCCACGCAAAAAGTAAAAAATGATGTTTCTACTGGCATG
CAGCTTAATTTCTCGATGCGTACAACGAGTGTTTTTCCTTCTATGGCTATCCAGATGACTGCCATTGGTGAAGAGTCCGG
TTCGCTTGATGAGATGCTAAGCAAGGTTGCCACGTACTATGAGGACGAGGTGGATAATATGGTTGATGGTCTCACTAGTC
TGATGGAGCCTATTATTATGGCAGTGCTGGGAGTTTTGGTTGGTGGTCTAATCATCGCAATGTACCTGCCTATCTTCCAG
CTGGGTAGCGTGGTTGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

86.667

99.754

0.865
  pilC Acinetobacter baumannii D1279779

59.753

99.754

0.596
  pilC Acinetobacter baylyi ADP1

60.05

98.03

0.589
  pilC Legionella pneumophila strain ERS1305867

54.04

97.537

0.527
  pilG Neisseria gonorrhoeae MS11

43.939

97.537

0.429
  pilG Neisseria meningitidis 44/76-A

43.939

97.537

0.429
  pilC Vibrio cholerae strain A1552

43.073

97.783

0.421
  pilC Vibrio campbellii strain DS40M4

41.31

97.783

0.404

Multiple sequence alignment