Detailed information NTG0120135

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: UIB01_RS04685
• Genome accession: NZ_CP007509
• Coordinates: 1022890..1023759 (+)
• Length: 289 a.a.
• NCBI ID: WP_038657337.1
• Uniprot ID: -
• Organism: Stutzerimonas decontaminans strain 19SMN4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1017890..1028759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UIB01_RS04670 (UIB01_04735)	pilA	1019210..1019632 (-)	423	WP_038657331.1	pilin	Machinery gene
UIB01_RS04675 (UIB01_04740)	pilB	1019954..1021666 (+)	1713	WP_038657333.1	type IV-A pilus assembly ATPase PilB	Machinery gene
UIB01_RS04680 (UIB01_04745)	pilC	1021669..1022889 (+)	1221	WP_038657335.1	type II secretion system F family protein	Machinery gene
UIB01_RS04685 (UIB01_04750)	pilD	1022890..1023759 (+)	870	WP_038657337.1	A24 family peptidase	Machinery gene
UIB01_RS04690 (UIB01_04755)	coaE	1023911..1024519 (+)	609	WP_038657340.1	dephospho-CoA kinase	-
UIB01_RS04695 (UIB01_04760)	yacG	1024516..1024713 (+)	198	WP_038657341.1	DNA gyrase inhibitor YacG	-
UIB01_RS04700 (UIB01_04765)	-	1024752..1025432 (-)	681	WP_038657343.1	energy-coupling factor ABC transporter permease	-
UIB01_RS04705 (UIB01_04770)	-	1025499..1026536 (-)	1038	WP_038657345.1	NADP(H)-dependent aldo-keto reductase	-
UIB01_RS04710 (UIB01_04775)	rplM	1026970..1027398 (+)	429	WP_038657347.1	50S ribosomal protein L13	-
UIB01_RS04715 (UIB01_04780)	rpsI	1027413..1027805 (+)	393	WP_003302797.1	30S ribosomal protein S9	-
UIB01_RS04720 (UIB01_04785)	petA	1028060..1028653 (+)	594	WP_038657349.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32387.57 Da
• Isoelectric Point: 6.9224

>NTDB_id=120135 UIB01_RS04685 WP_038657337.1 1022890..1023759(+) (pilD) [Stutzerimonas decontaminans strain 19SMN4]
MMILELMASHVLAFVLSAALLGLLVGSFLNVVIYRLPIMMQRDWRIQAREYLECPPEPAGERFNLLLPNSRCPHCNHEIR
SWENIPLISWLALRGKCSSCRAPISCRYPLVELACGLLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDVLV
LPLLWLGLILNNFGLFVALESAFWGVVAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRLQRAESSTPIPFGPYLAIAGWIALLWGDWITESYLQFVRF

Nucleotide

• Length: 870 bp

>NTDB_id=120135 UIB01_RS04685 WP_038657337.1 1022890..1023759(+) (pilD) [Stutzerimonas decontaminans strain 19SMN4]
TTGATGATCCTCGAGCTAATGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCCGCTTTACTGGGTCTGTTGGTTGGCAG
CTTTCTCAATGTGGTTATTTATCGCTTGCCAATCATGATGCAGCGCGATTGGCGTATACAGGCGCGTGAGTATCTTGAGT
GTCCGCCGGAGCCGGCCGGTGAGCGCTTTAATTTACTGTTGCCAAACTCGCGCTGTCCTCACTGCAATCATGAGATTCGT
TCTTGGGAAAACATTCCTTTAATCAGCTGGTTGGCCCTGCGTGGCAAGTGCTCATCCTGTCGTGCGCCGATTAGCTGTCG
TTATCCCTTGGTGGAGCTGGCTTGCGGGTTGTTGTCCGGCTATGTCGCCTGGCATTTCGGCTTCTCCTGGCAGGCAGGGG
CAATGCTGTTGCTGACCTGGGGCTTGTTGGCGATGAGCATGATCGATGTCGATCACCAGCTGTTGCCTGACGTGCTGGTG
CTGCCGCTACTGTGGCTCGGCCTCATCCTCAATAACTTCGGTTTGTTCGTGGCGCTGGAAAGTGCGTTCTGGGGTGTGGT
GGCGGGGTACCTGAGTCTCTGGTCGGTTTACTGGCTGTTCAAGTTGATCACCGGCAAGGAGGGCATGGGCTACGGTGACT
TCAAGCTGCTGGCAATGCTTGGGGCGTGGGGCGGATGGCAGGTGCTGCCGCTTACCATACTGCTGTCCTCAGTGGTCGGT
GCCGTGCTCGGTAGCATTCTCTTGCGGCTGCAGCGCGCAGAAAGCAGTACGCCCATCCCTTTCGGCCCATACCTAGCTAT
CGCAGGCTGGATTGCATTGCTGTGGGGCGACTGGATTACAGAAAGCTATCTGCAGTTCGTGCGCTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.446	99.308	0.561
pilD	Vibrio campbellii strain DS40M4	54.417	97.924	0.533
pilD	Acinetobacter baumannii D1279779	52.465	98.27	0.516
pilD	Acinetobacter nosocomialis M2	52.465	98.27	0.516
pilD	Neisseria gonorrhoeae MS11	52.107	90.311	0.471