Detailed information NTG1171339

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DYB47_RS08645
• Genome accession: NZ_UHFV01000002
• Coordinates: 1716295..1716690 (-)
• Length: 131 a.a.
• NCBI ID: WP_003078688.1
• Uniprot ID: G5JV28
• Organism: Streptococcus macacae NCTC 11558
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1711295..1721690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DYB47_RS08625 (NCTC11558_01747)	-	1712058..1712735 (-)	678	WP_003081947.1	response regulator transcription factor	-
DYB47_RS08630 (NCTC11558_01748)	-	1712732..1714051 (-)	1320	WP_003081132.1	sensor histidine kinase	-
DYB47_RS08635 (NCTC11558_01749)	-	1714051..1715016 (-)	966	WP_003081963.1	sugar ABC transporter substrate-binding protein	-
DYB47_RS08640 (NCTC11558_01750)	-	1715042..1715830 (-)	789	WP_003081524.1	Cof-type HAD-IIB family hydrolase	-
DYB47_RS08645 (NCTC11558_01751)	ssbA	1716295..1716690 (-)	396	WP_003078688.1	single-stranded DNA-binding protein	Machinery gene
DYB47_RS08650 (NCTC11558_01752)	-	1716810..1717175 (-)	366	WP_003080074.1	rhodanese-like domain-containing protein	-
DYB47_RS08655 (NCTC11558_01753)	-	1717168..1717590 (-)	423	WP_003082363.1	MarR family winged helix-turn-helix transcriptional regulator	-
DYB47_RS08660 (NCTC11558_01754)	-	1717798..1718145 (-)	348	WP_003082439.1	hypothetical protein	-
DYB47_RS08665 (NCTC11558_01755)	-	1718400..1718765 (-)	366	WP_003079826.1	PTS glucitol/sorbitol transporter subunit IIA	-
DYB47_RS08670 (NCTC11558_01756)	srlE	1718800..1719798 (-)	999	WP_003081153.1	PTS glucitol/sorbitol transporter subunit IIB	-
DYB47_RS08675 (NCTC11558_01757)	srlA	1719912..1720454 (-)	543	WP_003079251.1	PTS glucitol/sorbitol transporter subunit IIC	-
DYB47_RS08680 (NCTC11558_01758)	-	1720546..1721025 (-)	480	WP_003081876.1	transcriptional regulator GutM	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14758.80 Da
• Isoelectric Point: 9.4627

>NTDB_id=1171339 DYB47_RS08645 WP_003078688.1 1716295..1716690(-) (ssbA) [Streptococcus macacae NCTC 11558]
MYNKVILIGRLVAAPEMVKTSNDKSVTRVTVAVNRRFKGKDGERQADFVNVVLWGKLAETLASYGNKGSLISLDGEIRTR
KYEKDSRTHFVTEVLGQSFQLLESRAQRAVRENNSEKDLADLVLEGEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1171339 DYB47_RS08645 WP_003078688.1 1716295..1716690(-) (ssbA) [Streptococcus macacae NCTC 11558]
ATGTATAATAAAGTTATTTTAATTGGCCGTTTGGTAGCAGCACCTGAGATGGTTAAAACATCCAATGATAAGTCCGTTAC
TCGCGTAACAGTAGCTGTTAATCGCCGTTTTAAAGGAAAAGATGGAGAACGGCAGGCTGATTTTGTCAATGTTGTCCTTT
GGGGAAAGTTAGCTGAGACTTTAGCATCTTATGGCAATAAAGGCAGTCTTATTTCATTAGATGGTGAAATACGTACACGA
AAATATGAGAAAGACAGCAGGACGCATTTTGTGACAGAAGTTCTAGGCCAATCTTTTCAGCTGCTGGAAAGCCGTGCTCA
GCGTGCAGTGCGTGAGAATAATTCGGAAAAAGACCTAGCAGATCTTGTTCTTGAAGGTGAAGAGCTGCCTTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: G5JV28

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	87.023	100	0.87
ssbB	Streptococcus sobrinus strain NIDR 6715-7	79.389	100	0.794
ssbB/cilA	Streptococcus pneumoniae TIGR4	72.519	100	0.725
ssbB/cilA	Streptococcus pneumoniae Rx1	71.756	100	0.718
ssbB/cilA	Streptococcus pneumoniae D39	71.756	100	0.718
ssbB/cilA	Streptococcus pneumoniae R6	71.756	100	0.718
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.718
ssbB/cilA	Streptococcus mitis SK321	71.756	100	0.718
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	85.496	0.534
ssbA	Bacillus subtilis subsp. subtilis str. 168	46.226	80.916	0.374
ssb	Latilactobacillus sakei subsp. sakei 23K	42.478	86.26	0.366