Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNUD6_RS00235 Genome accession   NZ_OZ197091
Coordinates   29679..30107 (-) Length   142 a.a.
NCBI ID   WP_016187439.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01951-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1553..38980 29679..30107 within 0


Gene organization within MGE regions


Location: 1553..38980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD6_RS00010 - 1553..1858 (-) 306 WP_000467322.1 DUF2951 family protein -
  ACNUD6_RS00015 - 1898..2071 (-) 174 WP_078098837.1 XkdX family protein -
  ACNUD6_RS00020 - 2075..2452 (-) 378 WP_244800763.1 DUF2977 domain-containing protein -
  ACNUD6_RS00025 - 2452..4276 (-) 1825 Protein_4 BppU family phage baseplate upper protein -
  ACNUD6_RS00030 - 4276..6174 (-) 1899 WP_374731586.1 hypothetical protein -
  ACNUD6_RS00035 - 6187..8073 (-) 1887 WP_016187282.1 SGNH/GDSL hydrolase family protein -
  ACNUD6_RS00040 - 8084..9025 (-) 942 WP_021285834.1 phage tail domain-containing protein -
  ACNUD6_RS00045 - 9040..11925 (-) 2886 WP_021285835.1 phage tail protein -
  ACNUD6_RS00050 - 12262..12771 (-) 510 Protein_9 tail assembly chaperone -
  ACNUD6_RS00055 - 12838..13395 (-) 558 WP_000057585.1 hypothetical protein -
  ACNUD6_RS00060 - 13396..13821 (-) 426 WP_016187278.1 DUF3168 domain-containing protein -
  ACNUD6_RS00065 - 13834..14241 (-) 408 WP_021285836.1 HK97-gp10 family putative phage morphogenesis protein -
  ACNUD6_RS00070 - 14228..14563 (-) 336 WP_021285837.1 phage head closure protein -
  ACNUD6_RS00075 - 14575..14925 (-) 351 WP_016187275.1 hypothetical protein -
  ACNUD6_RS00080 - 14931..15074 (-) 144 WP_000002930.1 hypothetical protein -
  ACNUD6_RS00085 - 15086..16000 (-) 915 WP_016187274.1 phage major capsid protein -
  ACNUD6_RS00090 - 16017..16601 (-) 585 WP_016187273.1 DUF4355 domain-containing protein -
  ACNUD6_RS00095 - 16705..16938 (-) 234 WP_000440857.1 hypothetical protein -
  ACNUD6_RS00100 - 16942..17892 (-) 951 WP_000184140.1 phage head morphogenesis protein -
  ACNUD6_RS00105 - 17861..19285 (-) 1425 WP_016187272.1 phage portal protein -
  ACNUD6_RS00110 - 19282..20505 (-) 1224 WP_001037578.1 PBSX family phage terminase large subunit -
  ACNUD6_RS00115 - 20498..20959 (-) 462 WP_001794914.1 hypothetical protein -
  ACNUD6_RS00120 - 21320..21742 (-) 423 WP_000162701.1 RinA family phage transcriptional activator -
  ACNUD6_RS00125 - 21766..21912 (-) 147 WP_000989998.1 hypothetical protein -
  ACNUD6_RS00130 rinB 21913..22086 (-) 174 WP_025176537.1 transcriptional activator RinB -
  ACNUD6_RS00135 - 22079..22282 (-) 204 WP_016187270.1 hypothetical protein -
  ACNUD6_RS00140 - 22279..22485 (-) 207 WP_000195770.1 DUF1381 domain-containing protein -
  ACNUD6_RS00145 - 22522..23058 (-) 537 WP_000185693.1 dUTPase -
  ACNUD6_RS00150 - 23055..23300 (-) 246 WP_374731669.1 DUF1024 family protein -
  ACNUD6_RS00155 - 23277..23663 (-) 387 Protein_30 acetyltransferase -
  ACNUD6_RS00160 - 23663..23854 (-) 192 WP_021285959.1 hypothetical protein -
  ACNUD6_RS00165 - 23851..24257 (-) 407 Protein_32 hypothetical protein -
  ACNUD6_RS00170 - 24254..24466 (-) 213 WP_000695732.1 hypothetical protein -
  ACNUD6_RS00175 - 24480..25169 (-) 690 WP_000097190.1 N-6 DNA methylase -
  ACNUD6_RS00180 - 25166..25366 (-) 201 WP_000224767.1 hypothetical protein -
  ACNUD6_RS00185 - 25369..25626 (-) 258 WP_021285960.1 DUF3310 domain-containing protein -
  ACNUD6_RS00190 - 25626..25985 (-) 360 WP_416741410.1 SA1788 family PVL leukocidin-associated protein -
  ACNUD6_RS00195 - 26113..26418 (-) 306 WP_000101252.1 hypothetical protein -
  ACNUD6_RS00200 - 26419..26604 (-) 186 WP_001187243.1 DUF3113 family protein -
  ACNUD6_RS00205 - 26609..27013 (-) 405 WP_000049794.1 DUF1064 domain-containing protein -
  ACNUD6_RS00210 - 27023..27244 (-) 222 WP_001123688.1 DUF3269 family protein -
  ACNUD6_RS00215 - 27257..27418 (-) 162 WP_000237154.1 hypothetical protein -
  ACNUD6_RS00220 - 27412..28185 (-) 774 WP_021285961.1 ATP-binding protein -
  ACNUD6_RS00225 - 28195..28998 (-) 804 WP_000504986.1 phage replisome organizer N-terminal domain-containing protein -
  ACNUD6_RS00230 - 28970..29665 (-) 696 WP_015980404.1 putative HNHc nuclease -
  ACNUD6_RS00235 ssbA 29679..30107 (-) 429 WP_016187439.1 single-stranded DNA-binding protein Machinery gene
  ACNUD6_RS00240 - 30107..30745 (-) 639 WP_001043063.1 ERF family protein -
  ACNUD6_RS00245 - 30745..31224 (-) 480 WP_016187438.1 siphovirus Gp157 family protein -
  ACNUD6_RS00250 - 31239..31499 (-) 261 WP_021285962.1 DUF1108 family protein -
  ACNUD6_RS00255 - 31504..31806 (-) 303 WP_000163429.1 DUF2482 family protein -
  ACNUD6_RS00260 - 31909..32070 (-) 162 WP_000048124.1 DUF1270 family protein -
  ACNUD6_RS00265 - 32063..32284 (-) 222 WP_000977381.1 hypothetical protein -
  ACNUD6_RS00270 - 32355..32600 (+) 246 WP_016187267.1 hypothetical protein -
  ACNUD6_RS00275 - 32568..32771 (-) 204 Protein_54 hypothetical protein -
  ACNUD6_RS00280 - 32796..33536 (-) 741 WP_001576117.1 phage antirepressor KilAC domain-containing protein -
  ACNUD6_RS00285 - 33601..33837 (+) 237 WP_021285963.1 hypothetical protein -
  ACNUD6_RS00290 - 33830..33991 (-) 162 WP_001153175.1 hypothetical protein -
  ACNUD6_RS00295 - 34006..34245 (-) 240 WP_016187264.1 helix-turn-helix domain-containing protein -
  ACNUD6_RS00300 - 34437..35111 (+) 675 WP_000142628.1 XRE family transcriptional regulator -
  ACNUD6_RS00305 - 35163..36146 (+) 984 WP_021285964.1 glycosyltransferase family 2 protein -
  ACNUD6_RS00310 - 36157..36399 (+) 243 WP_016187262.1 hypothetical protein -
  ACNUD6_RS00315 - 36466..37515 (+) 1050 WP_001145730.1 tyrosine-type recombinase/integrase -
  ACNUD6_RS00320 sufB 37583..38980 (-) 1398 WP_001074405.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16066.57 Da        Isoelectric Point: 5.8724

>NTDB_id=1169252 ACNUD6_RS00235 WP_016187439.1 29679..30107(-) (ssbA) [Staphylococcus aureus isolate 23S01951-1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1169252 ACNUD6_RS00235 WP_016187439.1 29679..30107(-) (ssbA) [Staphylococcus aureus isolate 23S01951-1]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment