Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNUDY_RS14535 Genome accession   NZ_OZ197081
Coordinates   2889837..2890265 (+) Length   142 a.a.
NCBI ID   WP_016187439.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01946-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2884837..2895265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDY_RS14475 - 2885699..2885938 (+) 240 WP_016187264.1 helix-turn-helix domain-containing protein -
  ACNUDY_RS14480 - 2885953..2886114 (+) 162 WP_001153175.1 hypothetical protein -
  ACNUDY_RS14485 - 2886107..2886343 (-) 237 WP_021285963.1 hypothetical protein -
  ACNUDY_RS14490 - 2886408..2887148 (+) 741 WP_001576117.1 phage antirepressor KilAC domain-containing protein -
  ACNUDY_RS14495 - 2887173..2887376 (+) 204 Protein_2816 hypothetical protein -
  ACNUDY_RS14500 - 2887344..2887589 (-) 246 WP_016187267.1 hypothetical protein -
  ACNUDY_RS14505 - 2887660..2887881 (+) 222 WP_000977381.1 hypothetical protein -
  ACNUDY_RS14510 - 2887874..2888035 (+) 162 WP_000048124.1 DUF1270 family protein -
  ACNUDY_RS14515 - 2888138..2888440 (+) 303 WP_000163429.1 DUF2482 family protein -
  ACNUDY_RS14520 - 2888445..2888705 (+) 261 WP_021285962.1 DUF1108 family protein -
  ACNUDY_RS14525 - 2888720..2889199 (+) 480 WP_016187438.1 siphovirus Gp157 family protein -
  ACNUDY_RS14530 - 2889199..2889837 (+) 639 WP_001043063.1 ERF family protein -
  ACNUDY_RS14535 ssbA 2889837..2890265 (+) 429 WP_016187439.1 single-stranded DNA-binding protein Machinery gene
  ACNUDY_RS14540 - 2890279..2890974 (+) 696 WP_015980404.1 putative HNHc nuclease -
  ACNUDY_RS14545 - 2890946..2891749 (+) 804 WP_000504986.1 phage replisome organizer N-terminal domain-containing protein -
  ACNUDY_RS14550 - 2891759..2892532 (+) 774 WP_021285961.1 ATP-binding protein -
  ACNUDY_RS14555 - 2892526..2892687 (+) 162 WP_000237154.1 hypothetical protein -
  ACNUDY_RS14560 - 2892700..2892921 (+) 222 WP_001123688.1 DUF3269 family protein -
  ACNUDY_RS14565 - 2892931..2893335 (+) 405 WP_000049794.1 DUF1064 domain-containing protein -
  ACNUDY_RS14570 - 2893340..2893525 (+) 186 WP_001187243.1 DUF3113 family protein -
  ACNUDY_RS14575 - 2893526..2893831 (+) 306 WP_000101252.1 hypothetical protein -
  ACNUDY_RS14580 - 2893959..2894318 (+) 360 WP_416741410.1 SA1788 family PVL leukocidin-associated protein -
  ACNUDY_RS14585 - 2894318..2894575 (+) 258 WP_021285960.1 DUF3310 domain-containing protein -
  ACNUDY_RS14590 - 2894578..2894778 (+) 201 WP_000224767.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16066.57 Da        Isoelectric Point: 5.8724

>NTDB_id=1168868 ACNUDY_RS14535 WP_016187439.1 2889837..2890265(+) (ssbA) [Staphylococcus aureus isolate 23S01946-1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1168868 ACNUDY_RS14535 WP_016187439.1 2889837..2890265(+) (ssbA) [Staphylococcus aureus isolate 23S01946-1]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment