Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACFEL6_RS16920 Genome accession   NZ_OZ183475
Coordinates   2275794..2277527 (-) Length   577 a.a.
NCBI ID   WP_375321283.1    Uniprot ID   -
Organism   Aliivibrio logei isolate 622f83115ee5131b54a8b4d1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270794..2282527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL6_RS16900 dam 2271543..2272373 (-) 831 WP_130088139.1 adenine-specific DNA-methyltransferase -
  ACFEL6_RS16905 - 2272457..2273920 (-) 1464 WP_375321281.1 SPOR domain-containing protein -
  ACFEL6_RS16910 aroB 2273924..2275012 (-) 1089 WP_375321282.1 3-dehydroquinate synthase -
  ACFEL6_RS16915 aroK 2275051..2275569 (-) 519 WP_012551169.1 shikimate kinase AroK -
  ACFEL6_RS16920 pilQ 2275794..2277527 (-) 1734 WP_375321283.1 type IV pilus secretin PilQ Machinery gene
  ACFEL6_RS16925 pilP 2277553..2278071 (-) 519 WP_375321284.1 pilus assembly protein PilP Machinery gene
  ACFEL6_RS16930 pilO 2278064..2278645 (-) 582 WP_375321285.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFEL6_RS16935 - 2278642..2279208 (-) 567 WP_375321286.1 PilN domain-containing protein -
  ACFEL6_RS16940 pilM 2279193..2280191 (-) 999 WP_375321287.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62455.42 Da        Isoelectric Point: 4.4589

>NTDB_id=1168054 ACFEL6_RS16920 WP_375321283.1 2275794..2277527(-) (pilQ) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MLLGRKKITKQFGLRLCALIVLSSTHLTVSAEEVTLNELMSVNFQLSQKKEGVITVDLASAAATVDLKKEADKLIIELHD
TKVSDDKLVILDVEDFATLVSRIETFREPNSTILSVDIKGDYQYDYFLKDRSLQVVISSQPERDKNAKISNENDDSKPIS
INFQDIPVRHVLQLIADYNDFNLVVADTVQGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKSELDAQEQQVL
EQAQMASELGALSSEILSIKYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENLIVIKDIIDTLDVPIKQ
VQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGLYDGGSGTSGGGLPVDDFLNVNLGLANPAASSIAF
QVAKLGSNLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTEIPYLEASSSGATSVSFKKAVLSLMVTPQITPDN
RLVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGVLFRRSSEN
IGKKELLIFVTPKVVIQ

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1168054 ACFEL6_RS16920 WP_375321283.1 2275794..2277527(-) (pilQ) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGTTGCTAGGACGCAAGAAAATCACCAAGCAATTCGGTCTTCGACTATGTGCGCTTATTGTGCTTTCTTCTACTCATTT
AACCGTTTCTGCTGAAGAAGTGACTTTAAATGAACTGATGAGTGTGAATTTTCAATTGAGCCAGAAAAAAGAAGGAGTGA
TCACGGTTGATCTCGCTTCCGCTGCTGCTACGGTTGATTTAAAAAAAGAGGCAGATAAATTAATCATTGAATTGCATGAT
ACAAAAGTCAGCGATGATAAATTAGTTATTTTAGATGTTGAAGATTTTGCAACGTTAGTCTCTAGAATTGAAACGTTTAG
AGAGCCGAATAGTACTATTCTCTCGGTGGATATTAAGGGAGATTATCAATACGATTATTTTTTGAAAGATCGTTCACTAC
AAGTGGTTATTTCATCTCAACCAGAAAGAGATAAAAACGCTAAAATTAGCAATGAGAATGACGATAGCAAGCCTATTTCG
ATTAATTTCCAAGACATTCCTGTCCGACATGTATTGCAGCTTATTGCTGATTATAATGATTTTAACTTAGTTGTTGCTGA
TACCGTTCAAGGCAATTTAACATTGCGGTTAGATGGCGTTCCCTGGCAGCAAGTCTTAGACATTATCTTGCAGGTCAAAG
GGTTAGATAAGCGAGTGGAAGGTAATGTTGTGTTAATTGCACCTAAATCAGAGCTGGATGCACAAGAGCAACAAGTTTTA
GAGCAAGCTCAAATGGCATCAGAGCTGGGTGCTCTCTCTTCTGAGATCCTTTCAATTAAATACGCTAAAGCATCAGATAT
TGCCGAGTTATTAGTTGGTGAAGGAGAGATTACCATGCTCTCAAGCCGAGGTAGCATTACGGTAGATGAACGAACAAACT
CATTGCTGCTGCGTGATCTCCCTGAAAATTTAATCGTCATTAAAGATATTATTGATACGCTTGATGTTCCGATTAAACAA
GTACAAATTGAAGCTCGAATTGTTACTGTTAATGAAGGTAATCTTGATGAACTCGGGGTTCGTTGGGGGATTACGAATAC
CAATGGAAGTACTACTGTGGGAGGCTCCATTGAAAGTAATTTAGCTGCCGTTGGTTTGTATGATGGTGGTTCAGGTACAA
GTGGTGGTGGACTTCCTGTGGATGATTTTTTAAATGTAAACTTAGGGTTGGCAAACCCTGCAGCTTCTAGTATTGCTTTT
CAGGTTGCAAAGTTGGGGTCCAATTTATTATTAGATTTAGAGCTTTCTGCATTGCAAGCAGAATCTAAAGCAGAAATCAT
TTCAAGTCCTCGCTTAATTACAACCAATAAGAAGCCTGCGTATATAGAGCAAGGAACCGAAATTCCGTATCTAGAGGCCT
CTTCTAGCGGTGCAACGTCTGTTTCATTTAAGAAGGCGGTATTAAGTTTAATGGTGACACCACAAATTACACCTGATAAT
CGTTTGGTTCTTGATTTGACGGTTACTCAAGATAGACCGGGACAAGTGGTTAAAACAGGTACTGGAGAAGCGGTGGCTAT
TGATACTCAACGTATTGGTACACAAGTATTAGTTGATAATGGTGAAACTGTCGTTCTTGGTGGTATTTATCAACATTCAC
TATCAAATAGTGTAGAAAAAGTGCCACTATTAGGTGACTTACCTCTGCTTGGTGTGTTATTTCGTCGTAGCTCAGAAAAT
ATAGGTAAAAAAGAATTATTAATCTTCGTTACCCCAAAAGTTGTTATACAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(417-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

69.873

95.494

0.667
  pilQ Vibrio cholerae strain A1552

66.551

99.48

0.662
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

66.551

99.48

0.662
  pilQ Pseudomonas aeruginosa PAK

41.756

96.707

0.404
  pilQ Acinetobacter baumannii D1279779

38.435

99.653

0.383
  pilQ Acinetobacter baumannii strain A118

38.435

99.653

0.383
  comQ Acinetobacter baylyi ADP1

39.115

97.92

0.383
  pilQ Legionella pneumophila strain ERS1305867

40.257

94.281

0.38
  pilQ Legionella pneumophila strain Lp02

40.257

94.281

0.38

Multiple sequence alignment