Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACFEL6_RS16925 Genome accession   NZ_OZ183475
Coordinates   2277553..2278071 (-) Length   172 a.a.
NCBI ID   WP_375321284.1    Uniprot ID   -
Organism   Aliivibrio logei isolate 622f83115ee5131b54a8b4d1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272553..2283071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL6_RS16910 aroB 2273924..2275012 (-) 1089 WP_375321282.1 3-dehydroquinate synthase -
  ACFEL6_RS16915 aroK 2275051..2275569 (-) 519 WP_012551169.1 shikimate kinase AroK -
  ACFEL6_RS16920 pilQ 2275794..2277527 (-) 1734 WP_375321283.1 type IV pilus secretin PilQ Machinery gene
  ACFEL6_RS16925 pilP 2277553..2278071 (-) 519 WP_375321284.1 pilus assembly protein PilP Machinery gene
  ACFEL6_RS16930 pilO 2278064..2278645 (-) 582 WP_375321285.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFEL6_RS16935 - 2278642..2279208 (-) 567 WP_375321286.1 PilN domain-containing protein -
  ACFEL6_RS16940 pilM 2279193..2280191 (-) 999 WP_375321287.1 type IV pilus biogenesis protein PilM -
  ACFEL6_RS16945 - 2280330..2282828 (+) 2499 WP_375321288.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19273.50 Da        Isoelectric Point: 10.3631

>NTDB_id=1168055 ACFEL6_RS16925 WP_375321284.1 2277553..2278071(-) (pilP) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MSSRFLILVIGALVMVGCKANKDPLDTFYVEAKQQGESDVDKLSRVLPFEVEAYSQVDGRSPFVLPKQPEIATQPVKKKT
CWQPKYRKKTGALERYSLNRLRLKGVMGADSDITALVQTPKGSVVKVRKGQYMGSNNGQVVDINSRQITLKETLPDGMGC
WQKRYVKLALKH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1168055 ACFEL6_RS16925 WP_375321284.1 2277553..2278071(-) (pilP) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGAGTAGTCGATTTTTAATATTGGTTATTGGTGCTTTAGTGATGGTTGGGTGTAAGGCAAACAAAGATCCTCTGGATAC
TTTCTATGTTGAAGCAAAGCAACAAGGAGAAAGTGATGTAGATAAACTCTCTCGAGTTCTTCCTTTTGAAGTTGAAGCGT
ATTCCCAAGTGGATGGCCGTTCTCCTTTTGTGTTACCTAAGCAACCGGAAATTGCGACTCAGCCAGTAAAGAAAAAAACT
TGTTGGCAGCCAAAATATCGGAAGAAGACAGGAGCGTTAGAGCGCTATTCACTTAATCGGTTACGGTTAAAAGGTGTCAT
GGGGGCTGATTCAGACATTACTGCATTAGTGCAAACGCCAAAAGGAAGCGTTGTAAAGGTGCGTAAAGGGCAATATATGG
GAAGTAACAATGGGCAGGTTGTCGATATTAATTCAAGGCAAATCACATTAAAAGAGACCTTGCCTGATGGTATGGGTTGC
TGGCAAAAAAGATACGTAAAATTGGCGTTGAAACATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

51.515

95.93

0.494
  pilP Vibrio campbellii strain DS40M4

47.953

99.419

0.477

Multiple sequence alignment