Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB5Y62_RS01275 Genome accession   NZ_OZ078860
Coordinates   281407..283125 (+) Length   572 a.a.
NCBI ID   WP_368084059.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276407..288125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS01255 pilM 278636..279661 (+) 1026 WP_231901012.1 type IV pilus assembly protein PilM Machinery gene
  AB5Y62_RS01260 pilN 279645..280244 (+) 600 WP_017077615.1 PilN domain-containing protein Machinery gene
  AB5Y62_RS01265 pilO 280237..280866 (+) 630 WP_004729667.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB5Y62_RS01270 pilP 280853..281371 (+) 519 WP_004729666.1 pilus assembly protein PilP Machinery gene
  AB5Y62_RS01275 pilQ 281407..283125 (+) 1719 WP_368084059.1 type IV pilus secretin PilQ Machinery gene
  AB5Y62_RS01280 aroK 283302..283820 (+) 519 WP_004729664.1 shikimate kinase AroK -
  AB5Y62_RS01285 aroB 283846..284934 (+) 1089 WP_004729663.1 3-dehydroquinate synthase -
  AB5Y62_RS01290 - 285014..286531 (+) 1518 WP_368084060.1 SPOR domain-containing protein -
  AB5Y62_RS01295 - 286601..287449 (+) 849 WP_368084061.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62058.81 Da        Isoelectric Point: 4.4469

>NTDB_id=1166571 AB5Y62_RS01275 WP_368084059.1 281407..283125(+) (pilQ) [Vibrio splendidus isolate A06]
MIKGISGLVSKALQGFAVSVMLVFSVLGHAESLPNQLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VNDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATIAGDYQYEYNLKGRFIEVVISKPVINEATKEKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRSIIDSLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIESNHPSQITPYDDNGGNSAIDDFLNVNLGATSPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=1166571 AB5Y62_RS01275 WP_368084059.1 281407..283125(+) (pilQ) [Vibrio splendidus isolate A06]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTAGTCTTTAGTGTGCT
CGGTCACGCCGAGAGCTTACCTAATCAATTGGAGAATATTGATTTTAGGGTAAACAAAGATAAAGACGCCGTCATTATTA
TTGAGCTGGCAACCAGCACCGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAATTACTCAATACTCAA
GTTAATGACGATAAGCTTTATCTTTTGGATGTGAAGGATTTCGCGACCCTAGTGGAAGGTATTGAAGTCTATAAAGAGAC
GCCCAGCACACGACTGTTGGCGACGATCGCTGGCGACTATCAGTATGAATATAACCTAAAAGGTCGCTTCATAGAGGTGG
TGATCAGCAAGCCTGTTATCAATGAAGCGACCAAAGAGAAAAGCGTTTTAGAAAAAGAGGGCAAACTGATATCGATTAAC
TTCCAAGATATCCCGGTACGAAATGTCCTGCAGCTGATTGCTGACTACAACGATTTCAATCTCGTGGTGTCTGACTCAGT
AGCGGGTAACCTCACTTTACGTTTAGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGACTAG
ATAAGCGCGTTGATGGCAATGTTATTTTGGTGGCGCCAAAAGCAGAACTCGATCTTCGAGAGCAACAAGCGTTAGAGAAA
TCTCGCTTGGAAGAGGAGTTAGGGGAGCTTAAGTCGGAAATCATCAAGATTAATTTTGCTAAAGCCACCGACATTGCCGA
CATGATTGGCGGTGAAGGTGCGGTGAGCATGTTGTCCGATCGTGGCTCGATTACCATTGATGAACGCACCAATTCCCTAT
TGATTCGTGAACTGGAAGAAAATATTGCCGTGATACGAAGCATCATTGATTCTTTGGACATCCCCGTGAAGCAAGTCCAG
ATAGAGGCGCGCATCGTAACTGTTACCGAGGGTAACCTTGATGAGTTAGGGGTGCGTTGGGGTGTTTCTTCCACCAACGG
TAGCTTCAAAGTTGGCGGCTCGATAGAGAGCAACCACCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTG
CGATTGACGATTTCCTCAACGTTAATCTAGGGGCGACATCTCCTAATGCATCAAGCATTGCGTTTCAGGTGGCCAAACTG
GGTTCAGATACCTTGCTTGATCTTGAATTGTCGGCACTACAACAAGAGTCAAAAGCTGAGATTATTTCCAGCCCTCGTTT
AATCACCACCAATAAAAAGCCCGCTTATATTGAGCAAGGTACTGAAATTCCTTATTTAGAGTCGTCTTCAAGTGGTGCTA
CTTCGGTCGCATTTAAGAAAGCGGTGTTGAGTCTTAAGGTGACACCACAAATCACGCCCGATAATCGTTTGGTATTGGAT
TTAAGCGTGACTCAAGATAGGCCAGGGCAAGTAGTGAAAACGGGAACGGGTGAGGCTGTTGCCATTGACACTCAACGTAT
AGGAACGCAAGTGCTTGTTAATAATGGTGAAACAGTCGTGCTTGGCGGGATATTTCAGCACAGTGTGAGCAGTACAGTGG
ACAAAGTTCCTCTGTTAGGAGACCTGCCAGTTTTGGGTGCATTATTCCGTCGTAGCTATGAAAATGTGGGTAAAAGTGAA
CTACTTATTTTTGTTACACCCAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.875

100

0.781
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.875

100

0.781
  pilQ Vibrio campbellii strain DS40M4

80.479

94.93

0.764
  pilQ Legionella pneumophila strain ERS1305867

42.857

95.455

0.409
  pilQ Legionella pneumophila strain Lp02

42.857

95.455

0.409
  pilQ Pseudomonas aeruginosa PAK

40.787

97.727

0.399
  comQ Acinetobacter baylyi ADP1

39.965

99.301

0.397
  pilQ Acinetobacter baumannii D1279779

37.997

100

0.385
  pilQ Acinetobacter baumannii strain A118

37.997

100

0.385

Multiple sequence alignment