Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AB5Y62_RS01265 | Genome accession | NZ_OZ078860 |
| Coordinates | 280237..280866 (+) | Length | 209 a.a. |
| NCBI ID | WP_004729667.1 | Uniprot ID | - |
| Organism | Vibrio splendidus isolate A06 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 275237..285866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5Y62_RS01250 | - | 275923..278484 (-) | 2562 | WP_019350879.1 | penicillin-binding protein 1A | - |
| AB5Y62_RS01255 | pilM | 278636..279661 (+) | 1026 | WP_231901012.1 | type IV pilus assembly protein PilM | Machinery gene |
| AB5Y62_RS01260 | pilN | 279645..280244 (+) | 600 | WP_017077615.1 | PilN domain-containing protein | Machinery gene |
| AB5Y62_RS01265 | pilO | 280237..280866 (+) | 630 | WP_004729667.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AB5Y62_RS01270 | pilP | 280853..281371 (+) | 519 | WP_004729666.1 | pilus assembly protein PilP | Machinery gene |
| AB5Y62_RS01275 | pilQ | 281407..283125 (+) | 1719 | WP_368084059.1 | type IV pilus secretin PilQ | Machinery gene |
| AB5Y62_RS01280 | aroK | 283302..283820 (+) | 519 | WP_004729664.1 | shikimate kinase AroK | - |
| AB5Y62_RS01285 | aroB | 283846..284934 (+) | 1089 | WP_004729663.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24294.86 Da Isoelectric Point: 4.6751
>NTDB_id=1166569 AB5Y62_RS01265 WP_004729667.1 280237..280866(+) (pilO) [Vibrio splendidus isolate A06]
MANLQNKISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNKISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1166569 AB5Y62_RS01265 WP_004729667.1 280237..280866(+) (pilO) [Vibrio splendidus isolate A06]
ATGGCTAACCTTCAAAATAAGATTAGTTGGCAAAACAGGATGAGTTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAGCAGATGAAGCAACAGGAGCAGACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCGGCCTTACCTAAGCTTCAGAGTCAGCTGGATGAGCTAACTAGCCGTTATGACTATCTATTGGAGCAATTGCCCGTTCA
AAAAGAGCTCGCCAGTATGTTGGCCTCTGTGAACGAGCTTGGATTGGATAATAAGCTGACATTTACGCGAATTGACTGGG
GGCAGAAGCAGAACAAAGAGTTTCTTTATCGTTTACCGCTCAACATCGAGCTGACGGGTGACTACCACGAGATTGGTGAT
TTCTCTGCGGCCATCGCTAAGCTGCCACGCATCATCAGCTTTGATGACGTGAATTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTCAGGGTTCGAGCTTATACCTACCAATTTAAATCGGAGGTCAATGATGAAACCCAATAG
ATGGCTAACCTTCAAAATAAGATTAGTTGGCAAAACAGGATGAGTTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAGCAGATGAAGCAACAGGAGCAGACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCGGCCTTACCTAAGCTTCAGAGTCAGCTGGATGAGCTAACTAGCCGTTATGACTATCTATTGGAGCAATTGCCCGTTCA
AAAAGAGCTCGCCAGTATGTTGGCCTCTGTGAACGAGCTTGGATTGGATAATAAGCTGACATTTACGCGAATTGACTGGG
GGCAGAAGCAGAACAAAGAGTTTCTTTATCGTTTACCGCTCAACATCGAGCTGACGGGTGACTACCACGAGATTGGTGAT
TTCTCTGCGGCCATCGCTAAGCTGCCACGCATCATCAGCTTTGATGACGTGAATTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTCAGGGTTCGAGCTTATACCTACCAATTTAAATCGGAGGTCAATGATGAAACCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.166 |
92.344 |
0.703 |
| pilO | Vibrio campbellii strain DS40M4 |
73.514 |
88.517 |
0.651 |