Detailed information NTG1165721

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: AB3Y84_RS11175
• Genome accession: NZ_OZ061291
• Coordinates: 2239480..2240418 (-)
• Length: 312 a.a.
• NCBI ID: WP_098384262.1
• Uniprot ID: -
• Organism: Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2234480..2245418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y84_RS11140	-	2234772..2235638 (+)	867	WP_367294008.1	RluA family pseudouridine synthase	-
AB3Y84_RS11145	-	2235676..2236485 (-)	810	WP_014570791.1	metal ABC transporter permease	-
AB3Y84_RS11150	-	2236478..2237215 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
AB3Y84_RS11155	-	2237392..2238234 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
AB3Y84_RS11160	-	2238231..2238668 (-)	438	WP_367294009.1	zinc-dependent MarR family transcriptional regulator	-
AB3Y84_RS11165	comGG	2238749..2239033 (-)	285	WP_367294010.1	competence type IV pilus minor pilin ComGG	Machinery gene
AB3Y84_RS11170	comGB	2239143..2239445 (-)	303	WP_367294011.1	hypothetical protein	Machinery gene
AB3Y84_RS11175	comGA	2239480..2240418 (-)	939	WP_098384262.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 35675.88 Da
• Isoelectric Point: 6.1811

>NTDB_id=1165721 AB3Y84_RS11175 WP_098384262.1 2239480..2240418(-) (comGA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MIPKMAKELIQRAIDRDASDIYLIASKEKYKPYFRQMTARVLVEEIGLEVGLALLTHFKFLAGMNTGERRRVQLGACWYE
LEESNAKRLRLSTVGDFEGNESLVIRLLHDQNKELDFWFDEELENYDCKRGLHLFAGPVGSGKTSLMFDLARRHFTDLQV
ITIEEPVELIDSDFIQLQVNEVIGNSYDELIKLSLRHRPDLLIVGEIRDKLTAQAVLRASLTGYTVFSTVHASSVRGVIQ
RLSELGLSHWEIKNALSSVVYQRLIAGKGVLDIAKNEFESWSSENWNKKIDQLLTNGYLTPTEAKREKIKTD

Nucleotide

• Length: 939 bp

>NTDB_id=1165721 AB3Y84_RS11175 WP_098384262.1 2239480..2240418(-) (comGA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGATACCAAAAATGGCAAAAGAATTAATTCAAAGAGCAATTGATAGAGATGCATCAGATATTTATCTGATTGCTTCAAA
AGAAAAGTATAAACCTTATTTTCGACAAATGACAGCGCGTGTTCTGGTAGAAGAAATTGGGTTAGAAGTTGGCTTAGCAC
TACTTACTCACTTTAAGTTTCTAGCTGGGATGAATACAGGAGAACGCAGACGAGTTCAATTGGGAGCTTGTTGGTATGAA
TTAGAGGAAAGTAATGCAAAACGTTTGCGTCTTTCAACAGTGGGGGATTTCGAGGGTAATGAATCCTTAGTAATACGTCT
CTTGCATGATCAAAACAAAGAACTTGATTTTTGGTTTGATGAAGAGCTAGAGAATTATGATTGTAAAAGAGGATTGCATC
TCTTTGCCGGTCCAGTAGGCTCGGGAAAAACATCTTTAATGTTTGATTTAGCTCGTCGTCATTTTACAGATTTACAAGTT
ATCACTATTGAAGAACCCGTTGAGTTGATTGATTCCGATTTTATTCAGTTACAAGTCAACGAAGTCATTGGTAATAGTTA
TGATGAATTAATTAAATTATCACTGAGGCATCGCCCAGATTTGTTAATCGTTGGTGAAATTCGTGATAAATTGACCGCTC
AAGCAGTTTTACGGGCTAGTTTGACAGGTTATACAGTGTTTTCAACCGTTCATGCCTCTTCTGTTAGAGGTGTCATTCAG
AGATTATCAGAGCTGGGTTTAAGTCATTGGGAAATAAAAAATGCTTTATCAAGTGTTGTTTATCAGCGTTTAATAGCTGG
GAAAGGAGTATTAGACATTGCCAAAAACGAATTTGAGTCTTGGTCATCAGAAAATTGGAATAAAAAAATTGATCAGCTAC
TTACAAATGGATATCTCACACCTACTGAAGCCAAAAGGGAAAAAATTAAGACTGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (9-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Lactococcus lactis subsp. cremoris KW2	77.244	100	0.772
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	54.984	99.679	0.548
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	53.055	99.679	0.529
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	52.09	99.679	0.519
comGA/cglA/cilD	Streptococcus pneumoniae D39	52.09	99.679	0.519
comGA/cglA/cilD	Streptococcus pneumoniae R6	52.09	99.679	0.519
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	52.09	99.679	0.519
comYA	Streptococcus mutans UA140	51.923	100	0.519
comYA	Streptococcus mutans UA159	51.923	100	0.519
comYA	Streptococcus gordonii str. Challis substr. CH1	51.438	100	0.516