Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | AB3Y84_RS11170 | Genome accession | NZ_OZ061291 |
| Coordinates | 2239143..2239445 (-) | Length | 100 a.a. |
| NCBI ID | WP_367294011.1 | Uniprot ID | - |
| Organism | Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2234143..2244445
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3Y84_RS11135 | - | 2234190..2234567 (-) | 378 | WP_033900715.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| AB3Y84_RS11140 | - | 2234772..2235638 (+) | 867 | WP_367294008.1 | RluA family pseudouridine synthase | - |
| AB3Y84_RS11145 | - | 2235676..2236485 (-) | 810 | WP_014570791.1 | metal ABC transporter permease | - |
| AB3Y84_RS11150 | - | 2236478..2237215 (-) | 738 | WP_012898617.1 | metal ABC transporter ATP-binding protein | - |
| AB3Y84_RS11155 | - | 2237392..2238234 (-) | 843 | WP_015427160.1 | metal ABC transporter substrate-binding protein | - |
| AB3Y84_RS11160 | - | 2238231..2238668 (-) | 438 | WP_367294009.1 | zinc-dependent MarR family transcriptional regulator | - |
| AB3Y84_RS11165 | comGG | 2238749..2239033 (-) | 285 | WP_367294010.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AB3Y84_RS11170 | comGB | 2239143..2239445 (-) | 303 | WP_367294011.1 | hypothetical protein | Machinery gene |
| AB3Y84_RS11175 | comGA | 2239480..2240418 (-) | 939 | WP_098384262.1 | competence type IV pilus ATPase ComGA | Machinery gene |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 11170.34 Da Isoelectric Point: 10.2061
>NTDB_id=1165720 AB3Y84_RS11170 WP_367294011.1 2239143..2239445(-) (comGB) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MNIGFNLGEVINFLSLSKLVEKEFTLKMKEGLASGQALSELLESLSFSKNVVTQLALVEVHGNLSGTMQLVELHLKKQLK
VKNKLVEVATYPIRFKLLKI
MNIGFNLGEVINFLSLSKLVEKEFTLKMKEGLASGQALSELLESLSFSKNVVTQLALVEVHGNLSGTMQLVELHLKKQLK
VKNKLVEVATYPIRFKLLKI
Nucleotide
Download Length: 303 bp
>NTDB_id=1165720 AB3Y84_RS11170 WP_367294011.1 2239143..2239445(-) (comGB) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
TTGAATATTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTACATTAAA
AATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTGGTGACAC
AACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAACAGCTTAAA
GTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATAAGATTCAAGCTACTAAAAATTTAA
TTGAATATTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTACATTAAA
AATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTGGTGACAC
AACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAACAGCTTAAA
GTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATAAGATTCAAGCTACTAAAAATTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Lactococcus lactis subsp. cremoris KW2 |
83.871 |
93 |
0.78 |
| comYB | Streptococcus gordonii str. Challis substr. CH1 |
53.333 |
90 |
0.48 |
| comYB | Streptococcus mutans UA159 |
52.222 |
90 |
0.47 |
| comYB | Streptococcus mutans UA140 |
52.222 |
90 |
0.47 |
| comGB/cglB | Streptococcus mitis NCTC 12261 |
50.562 |
89 |
0.45 |
| comGB/cglB | Streptococcus mitis SK321 |
48.889 |
90 |
0.44 |
| comGB/cglB | Streptococcus pneumoniae Rx1 |
49.438 |
89 |
0.44 |
| comGB/cglB | Streptococcus pneumoniae D39 |
49.438 |
89 |
0.44 |
| comGB/cglB | Streptococcus pneumoniae R6 |
49.438 |
89 |
0.44 |
| comGB/cglB | Streptococcus pneumoniae TIGR4 |
49.438 |
89 |
0.44 |