Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   AB3Y84_RS11165 Genome accession   NZ_OZ061291
Coordinates   2238749..2239033 (-) Length   94 a.a.
NCBI ID   WP_367294010.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233749..2244033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS11135 - 2234190..2234567 (-) 378 WP_033900715.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB3Y84_RS11140 - 2234772..2235638 (+) 867 WP_367294008.1 RluA family pseudouridine synthase -
  AB3Y84_RS11145 - 2235676..2236485 (-) 810 WP_014570791.1 metal ABC transporter permease -
  AB3Y84_RS11150 - 2236478..2237215 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  AB3Y84_RS11155 - 2237392..2238234 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  AB3Y84_RS11160 - 2238231..2238668 (-) 438 WP_367294009.1 zinc-dependent MarR family transcriptional regulator -
  AB3Y84_RS11165 comGG 2238749..2239033 (-) 285 WP_367294010.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB3Y84_RS11170 comGB 2239143..2239445 (-) 303 WP_367294011.1 hypothetical protein Machinery gene
  AB3Y84_RS11175 comGA 2239480..2240418 (-) 939 WP_098384262.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10724.00 Da        Isoelectric Point: 6.2132

>NTDB_id=1165719 AB3Y84_RS11165 WP_367294010.1 2238749..2239033(-) (comGG) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MFSMFLQFYLQRQIDDARQLRSEKEQLTAELMVSVALKTGLKSQGQIHFDSGDLSYNLLTDSSASSKITDHSSDEKTYQF
SIHLKDGANFQIKN

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1165719 AB3Y84_RS11165 WP_367294010.1 2238749..2239033(-) (comGG) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGTTTTCAATGTTTCTTCAGTTCTATTTGCAAAGGCAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTT
AACAGCTGAATTAATGGTGTCAGTAGCTTTAAAGACTGGTTTAAAATCTCAAGGTCAAATTCATTTTGATTCAGGAGATT
TGTCCTACAATTTACTGACAGATTCGTCAGCCAGTTCAAAAATTACTGACCATTCAAGTGATGAAAAAACTTATCAATTT
AGTATCCATCTAAAAGATGGCGCAAACTTTCAAATAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

59.14

98.936

0.585

Multiple sequence alignment