Detailed information NTG1165688

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: AB3Y84_RS01845
• Genome accession: NZ_OZ061291
• Coordinates: 370502..370891 (+)
• Length: 129 a.a.
• NCBI ID: WP_098383548.1
• Uniprot ID: -
• Organism: Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	370502..373872	370502..370891	within	0

Gene organization within MGE regions

Location: 370502..373872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y84_RS01845	ssbB	370502..370891 (+)	390	WP_098383548.1	single-stranded DNA-binding protein	Machinery gene
AB3Y84_RS01850	groES	371011..371295 (+)	285	WP_003131589.1	co-chaperone GroES	-
AB3Y84_RS01855	groL	371384..373012 (+)	1629	WP_003131585.1	chaperonin GroEL	-
AB3Y84_RS01860	-	373060..373872 (-)	813	WP_003131583.1	MBL fold metallo-hydrolase	-

Sequence

Protein

• Length: 129 a.a.
• Molecular weight: 14614.65 Da
• Isoelectric Point: 8.3705

>NTDB_id=1165688 AB3Y84_RS01845 WP_098383548.1 370502..370891(+) (ssbB) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAVKGEETLLDAEELPF

Nucleotide

• Length: 390 bp

>NTDB_id=1165688 AB3Y84_RS01845 WP_098383548.1 370502..370891(+) (ssbB) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTGGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTGTAAAGGGTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Lactococcus lactis subsp. cremoris KW2	90.698	100	0.907
ssbB	Streptococcus sobrinus strain NIDR 6715-7	60.769	100	0.612
ssbB/cilA	Streptococcus pneumoniae TIGR4	56.923	100	0.574
ssbB/cilA	Streptococcus pneumoniae Rx1	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae D39	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae R6	56.154	100	0.566
ssbB/cilA	Streptococcus mitis NCTC 12261	56.154	100	0.566
ssbB/cilA	Streptococcus mitis SK321	56.154	100	0.566
ssbA	Streptococcus mutans UA159	55.385	100	0.558
ssb	Latilactobacillus sakei subsp. sakei 23K	43.75	86.822	0.38
ssbA	Bacillus subtilis subsp. subtilis str. 168	44.762	81.395	0.364