Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AACH22_RS26130 Genome accession   NZ_OY970400
Coordinates   5404205..5404567 (-) Length   120 a.a.
NCBI ID   WP_048685802.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans isolate BFRIG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5399205..5409567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH22_RS26115 (BFRIG_05289) - 5400155..5401771 (-) 1617 WP_072272238.1 ABC transporter substrate-binding protein -
  AACH22_RS26120 (BFRIG_05290) - 5401814..5402782 (-) 969 WP_057278171.1 dipeptide ABC transporter ATP-binding protein -
  AACH22_RS26125 (BFRIG_05291) - 5402763..5403767 (-) 1005 WP_152908346.1 ABC transporter ATP-binding protein -
  AACH22_RS26130 (BFRIG_05292) ssbB 5404205..5404567 (-) 363 WP_048685802.1 single-stranded DNA-binding protein Machinery gene
  AACH22_RS26135 (BFRIG_05293) - 5404927..5405361 (+) 435 WP_034315749.1 YwpF family protein -
  AACH22_RS26140 (BFRIG_05294) - 5405476..5405775 (-) 300 WP_048685804.1 hypothetical protein -
  AACH22_RS26145 (BFRIG_05295) fabZ 5406063..5406491 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AACH22_RS26150 (BFRIG_05296) - 5406619..5406873 (-) 255 WP_053087418.1 DNA-directed RNA polymerase subunit beta -
  AACH22_RS26155 (BFRIG_05297) - 5407042..5407884 (-) 843 WP_072272237.1 flagellar hook-basal body protein -
  AACH22_RS26160 (BFRIG_05298) - 5407933..5408772 (-) 840 WP_048685810.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13665.57 Da        Isoelectric Point: 9.6263

>NTDB_id=1162253 AACH22_RS26130 WP_048685802.1 5404205..5404567(-) (ssbB) [Peribacillus frigoritolerans isolate BFRIG]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGTKQHDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1162253 AACH22_RS26130 WP_048685802.1 5404205..5404567(-) (ssbB) [Peribacillus frigoritolerans isolate BFRIG]
ATGATTAATCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
GAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGTATAACTGGCAGAATACAAACAAGA
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGGAACTAAACA
ACATGATGGTAAGCCCAAAGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

52.066

100

0.525
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367

Multiple sequence alignment