Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACI6PH_RS05260 | Genome accession | NZ_OY724134 |
| Coordinates | 1102686..1103135 (+) | Length | 149 a.a. |
| NCBI ID | WP_404327856.1 | Uniprot ID | - |
| Organism | Companilactobacillus paralimentarius strain R19081 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1084558..1139250 | 1102686..1103135 | within | 0 |
Gene organization within MGE regions
Location: 1084558..1139250
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6PH_RS05115 (CPR19081_DFPECDIO_01035) | - | 1084558..1085790 (-) | 1233 | WP_227005137.1 | ISL3 family transposase | - |
| ACI6PH_RS05120 (CPR19081_DFPECDIO_01036) | - | 1086422..1086667 (-) | 246 | WP_404327833.1 | hypothetical protein | - |
| ACI6PH_RS05125 (CPR19081_DFPECDIO_01037) | galE | 1087087..1088079 (-) | 993 | WP_025085746.1 | UDP-glucose 4-epimerase GalE | - |
| ACI6PH_RS05130 (CPR19081_DFPECDIO_01038) | - | 1088252..1088911 (+) | 660 | WP_404327962.1 | class A sortase | - |
| ACI6PH_RS05135 (CPR19081_DFPECDIO_01039) | recJ | 1089009..1091336 (+) | 2328 | WP_404327834.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| ACI6PH_RS05140 (CPR19081_DFPECDIO_01040) | - | 1091358..1091876 (+) | 519 | WP_025085743.1 | adenine phosphoribosyltransferase | - |
| ACI6PH_RS05150 | - | 1092198..1092554 (-) | 357 | WP_404327963.1 | tyrosine-type recombinase/integrase | - |
| ACI6PH_RS05155 (CPR19081_DFPECDIO_01042) | - | 1092443..1092706 (-) | 264 | WP_404327835.1 | Arm DNA-binding domain-containing protein | - |
| ACI6PH_RS05160 | - | 1092970..1093125 (-) | 156 | WP_404327836.1 | hypothetical protein | - |
| ACI6PH_RS05165 (CPR19081_DFPECDIO_01043) | - | 1093169..1093492 (-) | 324 | WP_404327837.1 | SIR2 family protein | - |
| ACI6PH_RS05170 (CPR19081_DFPECDIO_01044) | - | 1093686..1094078 (-) | 393 | WP_404327838.1 | hypothetical protein | - |
| ACI6PH_RS05175 (CPR19081_DFPECDIO_01045) | - | 1094142..1094528 (-) | 387 | WP_404327839.1 | GIY-YIG nuclease family protein | - |
| ACI6PH_RS05180 (CPR19081_DFPECDIO_01046) | - | 1094551..1095513 (-) | 963 | WP_404327840.1 | DUF4041 domain-containing protein | - |
| ACI6PH_RS05185 (CPR19081_DFPECDIO_01047) | - | 1095629..1096297 (-) | 669 | WP_404327841.1 | hypothetical protein | - |
| ACI6PH_RS05190 (CPR19081_DFPECDIO_01048) | - | 1096299..1096511 (-) | 213 | WP_404327842.1 | hypothetical protein | - |
| ACI6PH_RS05195 (CPR19081_DFPECDIO_01049) | - | 1096655..1097068 (-) | 414 | WP_404327843.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ACI6PH_RS05200 (CPR19081_DFPECDIO_01050) | - | 1097058..1097396 (-) | 339 | WP_404327844.1 | helix-turn-helix domain-containing protein | - |
| ACI6PH_RS05205 (CPR19081_DFPECDIO_01051) | - | 1097536..1097721 (+) | 186 | WP_404327845.1 | helix-turn-helix domain-containing protein | - |
| ACI6PH_RS05210 (CPR19081_DFPECDIO_01052) | - | 1097883..1098035 (+) | 153 | WP_404327846.1 | hypothetical protein | - |
| ACI6PH_RS05215 (CPR19081_DFPECDIO_01054) | - | 1098385..1098573 (+) | 189 | WP_404327847.1 | hypothetical protein | - |
| ACI6PH_RS05220 | - | 1098528..1098866 (+) | 339 | WP_404327848.1 | hypothetical protein | - |
| ACI6PH_RS05225 (CPR19081_DFPECDIO_01055) | - | 1098872..1099204 (+) | 333 | WP_404327849.1 | DUF771 domain-containing protein | - |
| ACI6PH_RS05230 (CPR19081_DFPECDIO_01056) | - | 1099205..1099438 (+) | 234 | WP_404327850.1 | hypothetical protein | - |
| ACI6PH_RS05235 (CPR19081_DFPECDIO_01058) | - | 1099736..1099927 (+) | 192 | WP_404327851.1 | hypothetical protein | - |
| ACI6PH_RS05240 (CPR19081_DFPECDIO_01059) | bet | 1099848..1100645 (+) | 798 | WP_404327852.1 | phage recombination protein Bet | - |
| ACI6PH_RS05245 (CPR19081_DFPECDIO_01060) | - | 1100575..1101960 (+) | 1386 | WP_404327853.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| ACI6PH_RS05250 (CPR19081_DFPECDIO_01061) | - | 1102034..1102204 (+) | 171 | WP_404327854.1 | hypothetical protein | - |
| ACI6PH_RS05255 (CPR19081_DFPECDIO_01062) | - | 1102177..1102590 (+) | 414 | WP_404327855.1 | phage antirepressor KilAC domain-containing protein | - |
| ACI6PH_RS05260 (CPR19081_DFPECDIO_01063) | ssb | 1102686..1103135 (+) | 450 | WP_404327856.1 | single-stranded DNA-binding protein | Machinery gene |
| ACI6PH_RS05265 (CPR19081_DFPECDIO_01065) | - | 1103678..1104265 (+) | 588 | WP_404327857.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| ACI6PH_RS05275 | - | 1104824..1105009 (+) | 186 | WP_404327858.1 | DUF6275 family protein | - |
| ACI6PH_RS05280 | - | 1105099..1105221 (+) | 123 | WP_404327859.1 | hypothetical protein | - |
| ACI6PH_RS05285 | - | 1105298..1105996 (+) | 699 | Protein_1022 | terminase small subunit | - |
| ACI6PH_RS05290 (CPR19081_DFPECDIO_01068) | - | 1106072..1107329 (+) | 1258 | Protein_1023 | PBSX family phage terminase large subunit | - |
| ACI6PH_RS05295 (CPR19081_DFPECDIO_01069) | - | 1107319..1108503 (+) | 1185 | WP_404327860.1 | phage portal protein | - |
| ACI6PH_RS05300 (CPR19081_DFPECDIO_01070) | - | 1108422..1108865 (+) | 444 | WP_404327861.1 | phage portal protein | - |
| ACI6PH_RS05305 (CPR19081_DFPECDIO_01071) | - | 1108868..1109470 (+) | 603 | WP_404327862.1 | hypothetical protein | - |
| ACI6PH_RS05310 (CPR19081_DFPECDIO_01072) | - | 1109664..1110239 (+) | 576 | WP_404327863.1 | DUF4355 domain-containing protein | - |
| ACI6PH_RS05315 (CPR19081_DFPECDIO_01073) | - | 1110369..1110830 (+) | 462 | WP_404327864.1 | hypothetical protein | - |
| ACI6PH_RS05320 | - | 1110805..1110942 (+) | 138 | WP_404327865.1 | hypothetical protein | - |
| ACI6PH_RS05325 (CPR19081_DFPECDIO_01074) | - | 1110957..1111322 (+) | 366 | WP_404327866.1 | phage head-tail connector protein | - |
| ACI6PH_RS05330 (CPR19081_DFPECDIO_01075) | - | 1111327..1111650 (+) | 324 | WP_404327867.1 | hypothetical protein | - |
| ACI6PH_RS05335 (CPR19081_DFPECDIO_01076) | - | 1111640..1112290 (+) | 651 | WP_404327868.1 | phage tail protein | - |
| ACI6PH_RS05340 (CPR19081_DFPECDIO_01078) | - | 1112461..1112709 (+) | 249 | WP_404327869.1 | hypothetical protein | - |
| ACI6PH_RS05345 (CPR19081_DFPECDIO_01079) | - | 1112663..1113121 (+) | 459 | WP_404327870.1 | tail assembly chaperone | - |
| ACI6PH_RS05350 (CPR19081_DFPECDIO_01080) | - | 1113142..1113426 (+) | 285 | WP_404327871.1 | hypothetical protein | - |
| ACI6PH_RS05355 (CPR19081_DFPECDIO_01081) | - | 1113430..1113951 (+) | 522 | WP_404327872.1 | hypothetical protein | - |
| ACI6PH_RS05360 (CPR19081_DFPECDIO_01082) | - | 1113941..1115212 (+) | 1272 | WP_404327873.1 | hypothetical protein | - |
| ACI6PH_RS05365 (CPR19081_DFPECDIO_01083) | - | 1115173..1116204 (+) | 1032 | WP_404327874.1 | hypothetical protein | - |
| ACI6PH_RS05370 (CPR19081_DFPECDIO_01085) | - | 1116322..1117353 (+) | 1032 | WP_404327875.1 | hypothetical protein | - |
| ACI6PH_RS05375 | - | 1117382..1117504 (+) | 123 | WP_404327876.1 | hypothetical protein | - |
| ACI6PH_RS05380 (CPR19081_DFPECDIO_01086) | - | 1117491..1117871 (+) | 381 | WP_404327877.1 | phage tail protein | - |
| ACI6PH_RS05385 (CPR19081_DFPECDIO_01087) | - | 1118142..1118510 (+) | 369 | WP_404327878.1 | hypothetical protein | - |
| ACI6PH_RS05390 (CPR19081_DFPECDIO_01088) | - | 1118503..1118931 (+) | 429 | WP_404327879.1 | hypothetical protein | - |
| ACI6PH_RS05395 (CPR19081_DFPECDIO_01089) | - | 1118935..1119153 (+) | 219 | WP_404327880.1 | hypothetical protein | - |
| ACI6PH_RS05400 (CPR19081_DFPECDIO_01090) | - | 1119219..1119524 (+) | 306 | WP_404327881.1 | hypothetical protein | - |
| ACI6PH_RS05405 (CPR19081_DFPECDIO_01091) | - | 1119562..1119687 (+) | 126 | WP_404327882.1 | hypothetical protein | - |
| ACI6PH_RS05410 (CPR19081_DFPECDIO_01092) | - | 1119665..1119793 (+) | 129 | WP_404327883.1 | XkdX family protein | - |
| ACI6PH_RS05415 (CPR19081_DFPECDIO_01093) | - | 1119834..1120073 (+) | 240 | WP_404327884.1 | hypothetical protein | - |
| ACI6PH_RS05420 (CPR19081_DFPECDIO_01094) | - | 1120060..1120206 (+) | 147 | WP_404327885.1 | hypothetical protein | - |
| ACI6PH_RS05425 (CPR19081_DFPECDIO_01095) | - | 1120342..1121190 (+) | 849 | WP_404327886.1 | GH25 family lysozyme | - |
| ACI6PH_RS05430 (CPR19081_DFPECDIO_01096) | - | 1121220..1121345 (+) | 126 | WP_404327887.1 | hypothetical protein | - |
| ACI6PH_RS05435 (CPR19081_DFPECDIO_01097) | - | 1121476..1121655 (+) | 180 | WP_404327889.1 | hypothetical protein | - |
| ACI6PH_RS05440 (CPR19081_DFPECDIO_01098) | - | 1121981..1123120 (-) | 1140 | WP_025086250.1 | tyrosine-type recombinase/integrase | - |
| ACI6PH_RS05445 (CPR19081_DFPECDIO_01099) | - | 1123203..1123778 (-) | 576 | WP_309511004.1 | hypothetical protein | - |
| ACI6PH_RS05450 (CPR19081_DFPECDIO_01100) | - | 1124261..1125181 (+) | 921 | WP_404327580.1 | IS30-like element ISLsa1 family transposase | - |
| ACI6PH_RS05455 (CPR19081_DFPECDIO_01101) | - | 1125272..1125670 (-) | 399 | WP_025086247.1 | hypothetical protein | - |
| ACI6PH_RS05460 (CPR19081_DFPECDIO_01102) | - | 1125966..1126532 (+) | 567 | WP_404327890.1 | hypothetical protein | - |
| ACI6PH_RS05465 (CPR19081_DFPECDIO_01103) | - | 1126582..1128078 (-) | 1497 | WP_404327891.1 | hypothetical protein | - |
| ACI6PH_RS05470 (CPR19081_DFPECDIO_01104) | - | 1128281..1128766 (-) | 486 | WP_056955841.1 | TspO/MBR family protein | - |
| ACI6PH_RS05475 | - | 1129164..1131031 (+) | 1868 | Protein_1060 | PTS beta-glucoside transporter subunit IIBCA | - |
| ACI6PH_RS05480 (CPR19081_DFPECDIO_01107) | - | 1131044..1132561 (+) | 1518 | WP_404327892.1 | glycoside hydrolase family 1 protein | - |
| ACI6PH_RS05485 (CPR19081_DFPECDIO_01108) | - | 1132645..1132896 (+) | 252 | WP_002816285.1 | IS3 family transposase | - |
| ACI6PH_RS05490 (CPR19081_DFPECDIO_01109) | - | 1132914..1133792 (+) | 879 | WP_309511212.1 | IS3 family transposase | - |
| ACI6PH_RS05495 (CPR19081_DFPECDIO_01110) | - | 1134619..1135044 (+) | 426 | WP_404327893.1 | universal stress protein | - |
| ACI6PH_RS05500 (CPR19081_DFPECDIO_01111) | - | 1135185..1135736 (-) | 552 | WP_051564362.1 | phosphatidylglycerophosphatase A | - |
| ACI6PH_RS05505 (CPR19081_DFPECDIO_01112) | - | 1135723..1136376 (-) | 654 | WP_056955845.1 | HD domain-containing protein | - |
| ACI6PH_RS05510 (CPR19081_DFPECDIO_01113) | - | 1136529..1137563 (-) | 1035 | WP_059075255.1 | IS30 family transposase | - |
| ACI6PH_RS05515 (CPR19081_DFPECDIO_01114) | - | 1137670..1138167 (+) | 498 | Protein_1068 | peroxiredoxin | - |
| ACI6PH_RS05520 (CPR19081_DFPECDIO_01115) | pnuC | 1138507..1139250 (+) | 744 | WP_025085836.1 | nicotinamide riboside transporter PnuC | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16712.35 Da Isoelectric Point: 6.4696
>NTDB_id=1160332 ACI6PH_RS05260 WP_404327856.1 1102686..1103135(+) (ssb) [Companilactobacillus paralimentarius strain R19081]
MINRTVLVGRLTRDPELKRTANGAAVASFTLAVNRQFTNSQGEREADFINCVIWRKAAENFTKLVHKGYLVGIDGRIQTR
NYENKQGNRVYVTEVVVDNFSLLESRNTNSSNNAHDNSNNQSNNSNDNMSDPFADNSKPIDISDDSLPF
MINRTVLVGRLTRDPELKRTANGAAVASFTLAVNRQFTNSQGEREADFINCVIWRKAAENFTKLVHKGYLVGIDGRIQTR
NYENKQGNRVYVTEVVVDNFSLLESRNTNSSNNAHDNSNNQSNNSNDNMSDPFADNSKPIDISDDSLPF
Nucleotide
Download Length: 450 bp
>NTDB_id=1160332 ACI6PH_RS05260 WP_404327856.1 1102686..1103135(+) (ssb) [Companilactobacillus paralimentarius strain R19081]
ATGATTAATAGAACTGTTTTAGTAGGACGACTAACACGTGATCCAGAATTGAAACGTACAGCTAATGGTGCAGCAGTTGC
CAGTTTTACATTGGCTGTAAACAGACAATTTACTAATTCTCAAGGGGAACGTGAAGCCGACTTTATTAATTGCGTTATTT
GGAGAAAGGCAGCAGAAAACTTTACCAAATTAGTTCATAAAGGTTATCTTGTTGGAATTGATGGACGTATTCAAACACGT
AACTATGAGAATAAGCAAGGCAACAGGGTTTATGTAACAGAAGTTGTCGTGGATAACTTCTCGCTGCTTGAAAGCAGAAA
TACTAATTCAAGCAATAATGCTCATGATAATTCAAATAATCAATCTAACAATTCAAACGATAATATGAGCGATCCGTTTG
CTGACAACAGTAAACCAATCGACATATCAGATGATTCATTGCCATTTTAA
ATGATTAATAGAACTGTTTTAGTAGGACGACTAACACGTGATCCAGAATTGAAACGTACAGCTAATGGTGCAGCAGTTGC
CAGTTTTACATTGGCTGTAAACAGACAATTTACTAATTCTCAAGGGGAACGTGAAGCCGACTTTATTAATTGCGTTATTT
GGAGAAAGGCAGCAGAAAACTTTACCAAATTAGTTCATAAAGGTTATCTTGTTGGAATTGATGGACGTATTCAAACACGT
AACTATGAGAATAAGCAAGGCAACAGGGTTTATGTAACAGAAGTTGTCGTGGATAACTTCTCGCTGCTTGAAAGCAGAAA
TACTAATTCAAGCAATAATGCTCATGATAATTCAAATAATCAATCTAACAATTCAAACGATAATATGAGCGATCCGTTTG
CTGACAACAGTAAACCAATCGACATATCAGATGATTCATTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.765 |
100 |
0.705 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.651 |
100 |
0.631 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
71.141 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.597 |
100 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.597 |
100 |
0.396 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.597 |
100 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.926 |
100 |
0.389 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.926 |
100 |
0.389 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.926 |
100 |
0.389 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.926 |
100 |
0.389 |
| ssbA | Streptococcus mutans UA159 |
36.913 |
100 |
0.369 |