Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | QOY19_RS01135 | Genome accession | NZ_OX595791 |
| Coordinates | 197241..198212 (+) | Length | 323 a.a. |
| NCBI ID | WP_001933355.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae isolate MRI Z2-270 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 192241..203212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOY19_RS01125 | rpoC | 192939..196589 (+) | 3651 | WP_000228729.1 | DNA-directed RNA polymerase subunit beta' | - |
| QOY19_RS01130 | - | 196703..197068 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| QOY19_RS01135 | comYA | 197241..198212 (+) | 972 | WP_001933355.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QOY19_RS01140 | comYB | 198106..199149 (+) | 1044 | WP_223295889.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QOY19_RS01145 | comGC/cglC | 199146..199475 (+) | 330 | WP_000793380.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| QOY19_RS01150 | comYD | 199450..199863 (+) | 414 | WP_000244261.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| QOY19_RS01155 | comGE | 199835..200134 (+) | 300 | WP_000234804.1 | competence type IV pilus minor pilin ComGE | - |
| QOY19_RS01160 | comGF | 200088..200549 (+) | 462 | WP_001874812.1 | competence type IV pilus minor pilin ComGF | - |
| QOY19_RS01165 | comGG | 200527..200898 (+) | 372 | WP_000601104.1 | competence type IV pilus minor pilin ComGG | - |
| QOY19_RS01170 | comYH | 201013..201987 (+) | 975 | WP_001008574.1 | N-6 DNA methylase | Machinery gene |
| QOY19_RS01175 | - | 202019..203212 (+) | 1194 | WP_000047534.1 | acetate kinase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 36849.37 Da Isoelectric Point: 6.8469
>NTDB_id=1159902 QOY19_RS01135 WP_001933355.1 197241..198212(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-270]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMFFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMFFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF
Nucleotide
Download Length: 972 bp
>NTDB_id=1159902 QOY19_RS01135 WP_001933355.1 197241..198212(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-270]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGTTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGTTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA159 |
68.489 |
96.285 |
0.659 |
| comYA | Streptococcus mutans UA140 |
68.489 |
96.285 |
0.659 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
63.323 |
98.762 |
0.625 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
62.379 |
96.285 |
0.601 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
61.415 |
96.285 |
0.591 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
61.613 |
95.975 |
0.591 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
50.311 |
99.69 |
0.502 |