Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QOY19_RS01170 Genome accession   NZ_OX595791
Coordinates   201013..201987 (+) Length   324 a.a.
NCBI ID   WP_001008574.1    Uniprot ID   A0AAV3JGK6
Organism   Streptococcus agalactiae isolate MRI Z2-270     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196013..206987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY19_RS01130 - 196703..197068 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOY19_RS01135 comYA 197241..198212 (+) 972 WP_001933355.1 competence type IV pilus ATPase ComGA Machinery gene
  QOY19_RS01140 comYB 198106..199149 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOY19_RS01145 comGC/cglC 199146..199475 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QOY19_RS01150 comYD 199450..199863 (+) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOY19_RS01155 comGE 199835..200134 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  QOY19_RS01160 comGF 200088..200549 (+) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF -
  QOY19_RS01165 comGG 200527..200898 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  QOY19_RS01170 comYH 201013..201987 (+) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  QOY19_RS01175 - 202019..203212 (+) 1194 WP_000047534.1 acetate kinase -
  QOY19_RS01180 - 203364..203570 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QOY19_RS01185 - 203629..203766 (+) 138 WP_001865900.1 hypothetical protein -
  QOY19_RS01190 - 203807..204262 (+) 456 WP_000905673.1 hypothetical protein -
  QOY19_RS01195 - 204331..204996 (+) 666 WP_000008113.1 type II CAAX endopeptidase family protein -
  QOY19_RS01200 proC 205017..205787 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  QOY19_RS01205 pepA 205857..206924 (-) 1068 WP_001281323.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37046.02 Da        Isoelectric Point: 4.5224

>NTDB_id=1159906 QOY19_RS01170 WP_001008574.1 201013..201987(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-270]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1159906 QOY19_RS01170 WP_001008574.1 201013..201987(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-270]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment