Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOR48_RS01175 Genome accession   NZ_OX460942
Coordinates   199163..199558 (+) Length   131 a.a.
NCBI ID   WP_000282450.1    Uniprot ID   A0AAW6XW90
Organism   Streptococcus agalactiae isolate MRI Z2-158     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 190265..235946 199163..199558 within 0


Gene organization within MGE regions


Location: 190265..235946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR48_RS01110 comYH 190554..191528 (+) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  QOR48_RS01115 - 191560..192753 (+) 1194 WP_000047535.1 acetate kinase -
  QOR48_RS01120 - 192904..193110 (+) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  QOR48_RS01125 - 193169..193306 (+) 138 WP_001867090.1 hypothetical protein -
  QOR48_RS01130 - 193347..193802 (+) 456 WP_000905674.1 hypothetical protein -
  QOR48_RS01135 - 193871..194536 (+) 666 WP_000008111.1 type II CAAX endopeptidase family protein -
  QOR48_RS01140 proC 194557..195327 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  QOR48_RS01145 pepA 195397..196464 (-) 1068 WP_001281321.1 glutamyl aminopeptidase -
  QOR48_RS01150 - 196649..196888 (-) 240 WP_000660181.1 hypothetical protein -
  QOR48_RS01155 - 197049..197333 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  QOR48_RS01160 - 197330..197653 (+) 324 WP_000601792.1 thioredoxin family protein -
  QOR48_RS01165 ytpR 197686..198312 (+) 627 WP_000578331.1 YtpR family tRNA-binding protein -
  QOR48_RS01170 - 198366..199082 (-) 717 WP_000186183.1 class I SAM-dependent methyltransferase -
  QOR48_RS01175 ssbA 199163..199558 (+) 396 WP_000282450.1 single-stranded DNA-binding protein Machinery gene
  QOR48_RS01180 - 199681..200325 (+) 645 WP_000416612.1 HAD family hydrolase -
  QOR48_RS01185 - 200352..202097 (+) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  QOR48_RS01190 - 202078..202818 (+) 741 WP_000697630.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  QOR48_RS01195 - 202988..203443 (+) 456 WP_000683316.1 CidA/LrgA family protein -
  QOR48_RS01200 lrgB 203445..204173 (+) 729 WP_000421727.1 antiholin-like protein LrgB -
  QOR48_RS01205 - 204416..206044 (+) 1629 WP_000170504.1 ABC transporter substrate-binding protein -
  QOR48_RS01210 - 206157..207134 (+) 978 WP_000680644.1 ABC transporter permease -
  QOR48_RS01215 - 207131..207952 (+) 822 WP_000603397.1 ABC transporter permease -
  QOR48_RS01220 - 207964..208767 (+) 804 WP_000140979.1 ABC transporter ATP-binding protein -
  QOR48_RS01225 - 208751..209377 (+) 627 WP_283573022.1 ABC transporter ATP-binding protein -
  QOR48_RS01230 treP 209659..211689 (+) 2031 WP_000434610.1 PTS system trehalose-specific EIIBC component -
  QOR48_RS01235 treC 211911..213536 (+) 1626 WP_000151014.1 alpha,alpha-phosphotrehalase -
  QOR48_RS01240 - 213756..215792 (+) 2037 WP_000228178.1 BglG family transcription antiterminator -
  QOR48_RS01245 - 215795..216079 (+) 285 WP_000944235.1 PTS sugar transporter subunit IIB -
  QOR48_RS01250 - 216092..217447 (+) 1356 WP_000677353.1 PTS ascorbate transporter subunit IIC -
  QOR48_RS01255 - 217450..218307 (+) 858 WP_000203492.1 transketolase -
  QOR48_RS01260 - 218304..219233 (+) 930 WP_001203828.1 transketolase C-terminal domain-containing protein -
  QOR48_RS01265 - 219342..220601 (+) 1260 WP_001203074.1 ferric reductase-like transmembrane domain-containing protein -
  QOR48_RS01270 rpsO 220689..220958 (+) 270 WP_001018249.1 30S ribosomal protein S15 -
  QOR48_RS01275 pnp 221340..223469 (+) 2130 WP_000043857.1 polyribonucleotide nucleotidyltransferase -
  QOR48_RS01280 - 223471..224223 (+) 753 WP_000204780.1 SseB family protein -
  QOR48_RS01285 cysE 224232..224816 (+) 585 WP_000539954.1 serine O-acetyltransferase -
  QOR48_RS01290 - 224826..225008 (+) 183 WP_000656477.1 hypothetical protein -
  QOR48_RS01295 cysS 225005..226348 (+) 1344 WP_000591129.1 cysteine--tRNA ligase -
  QOR48_RS01300 - 226341..226727 (+) 387 WP_000568029.1 Mini-ribonuclease 3 -
  QOR48_RS01305 rlmB 226830..227585 (+) 756 WP_000178019.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QOR48_RS01310 - 227582..228100 (+) 519 WP_000716636.1 NYN domain-containing protein -
  QOR48_RS01315 - 228193..229053 (+) 861 WP_000143135.1 DegV family protein -
  QOR48_RS01320 - 229591..229710 (+) 120 Protein_207 helix-turn-helix domain-containing protein -
  QOR48_RS01325 - 230028..231194 (-) 1167 WP_000160598.1 IS30-like element ISSag9 family transposase -
  QOR48_RS01330 rplM 231495..231941 (+) 447 WP_001867156.1 50S ribosomal protein L13 -
  QOR48_RS01335 rpsI 231962..232354 (+) 393 WP_000035940.1 30S ribosomal protein S9 -
  QOR48_RS01340 - 232500..233654 (-) 1155 WP_000110711.1 site-specific integrase -
  QOR48_RS01345 - 233709..234227 (-) 519 WP_000181342.1 helix-turn-helix transcriptional regulator -
  QOR48_RS01350 - 234374..234658 (+) 285 WP_001287945.1 hypothetical protein -
  QOR48_RS01355 - 234670..235524 (+) 855 WP_000005759.1 phage replisome organizer N-terminal domain-containing protein -
  QOR48_RS01360 - 235535..235825 (+) 291 WP_000158581.1 DUF5962 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14790.80 Da        Isoelectric Point: 7.0189

>NTDB_id=1159176 QOR48_RS01175 WP_000282450.1 199163..199558(+) (ssbA) [Streptococcus agalactiae isolate MRI Z2-158]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTR
KYEKDGQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1159176 QOR48_RS01175 WP_000282450.1 199163..199558(+) (ssbA) [Streptococcus agalactiae isolate MRI Z2-158]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAGTAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTTCCCA
ACGTGCTATGCGTGAAAATAACATTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

59.649

87.023

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.402

81.679

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment