Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | QEN43_RS00730 | Genome accession | NZ_OX458333 |
| Coordinates | 161718..162932 (-) | Length | 404 a.a. |
| NCBI ID | WP_026610410.1 | Uniprot ID | - |
| Organism | Methylocaldum szegediense isolate Msz(Nor) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 156718..167932
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN43_RS00700 (MSZNOR_0174) | aspS | 156758..158542 (-) | 1785 | WP_026610404.1 | aspartate--tRNA ligase | - |
| QEN43_RS00705 (MSZNOR_0175) | - | 158610..158894 (-) | 285 | WP_026610405.1 | FmdB family zinc ribbon protein | - |
| QEN43_RS00710 (MSZNOR_0176) | - | 159076..159294 (-) | 219 | WP_026610406.1 | DNA gyrase inhibitor YacG | - |
| QEN43_RS00715 (MSZNOR_0177) | zapD | 159304..160098 (-) | 795 | WP_235726606.1 | cell division protein ZapD | - |
| QEN43_RS00720 (MSZNOR_0178) | coaE | 160215..160814 (-) | 600 | WP_026610408.1 | dephospho-CoA kinase | - |
| QEN43_RS00725 (MSZNOR_0179) | pilD | 160820..161701 (-) | 882 | WP_036268865.1 | A24 family peptidase | Machinery gene |
| QEN43_RS00730 (MSZNOR_0180) | pilC | 161718..162932 (-) | 1215 | WP_026610410.1 | type II secretion system F family protein | Machinery gene |
| QEN43_RS00735 (MSZNOR_0181) | pilB | 162938..164653 (-) | 1716 | WP_026610411.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 404 a.a. Molecular weight: 43946.09 Da Isoelectric Point: 9.4125
>NTDB_id=1158457 QEN43_RS00730 WP_026610410.1 161718..162932(-) (pilC) [Methylocaldum szegediense isolate Msz(Nor)]
MAKEDVVLFVWEGVDRTGGRLKGELAARTEITAKAELRRQGIKVVKIKKKPKPLFSGRKKKITTKDIAVFSRQLATMMSA
GVPLVQAFDIVGRGHENPSMQDLILGIKADIEGGSPLAEALGKHPVYFDELFCNLVHAGEQAGVLETLLHKIAEYKEKTE
SLKAKIKKALTYPTAVIVVACIVTAILLIFVVPTFEELFKGFGADLPAFTQMVIELSRFLQSSWYIVLGVLIVIGIVFVK
LKQRSPAFNQALDRLLLHIPAIGTIVHKAAISRFARTLATMSAAGVPLVEALRSVAGATGNIIYSNAVLKMRDEVATGHQ
LQLCMRQANLFPNMVIQMVAIGEESGSLDSMLAKVADFYEEEVDNAVDSLSSLLEPMIMAFLGVIVGGLVIAMYLPIFKL
GSVV
MAKEDVVLFVWEGVDRTGGRLKGELAARTEITAKAELRRQGIKVVKIKKKPKPLFSGRKKKITTKDIAVFSRQLATMMSA
GVPLVQAFDIVGRGHENPSMQDLILGIKADIEGGSPLAEALGKHPVYFDELFCNLVHAGEQAGVLETLLHKIAEYKEKTE
SLKAKIKKALTYPTAVIVVACIVTAILLIFVVPTFEELFKGFGADLPAFTQMVIELSRFLQSSWYIVLGVLIVIGIVFVK
LKQRSPAFNQALDRLLLHIPAIGTIVHKAAISRFARTLATMSAAGVPLVEALRSVAGATGNIIYSNAVLKMRDEVATGHQ
LQLCMRQANLFPNMVIQMVAIGEESGSLDSMLAKVADFYEEEVDNAVDSLSSLLEPMIMAFLGVIVGGLVIAMYLPIFKL
GSVV
Nucleotide
Download Length: 1215 bp
>NTDB_id=1158457 QEN43_RS00730 WP_026610410.1 161718..162932(-) (pilC) [Methylocaldum szegediense isolate Msz(Nor)]
ATGGCTAAAGAAGACGTTGTTTTGTTCGTTTGGGAAGGCGTCGACCGCACCGGCGGACGGCTCAAAGGCGAACTCGCCGC
GCGTACCGAAATCACCGCCAAGGCAGAACTCCGACGCCAGGGCATCAAAGTCGTCAAGATCAAGAAAAAGCCCAAACCAC
TCTTCAGTGGGCGAAAGAAAAAAATTACAACCAAGGACATCGCTGTATTCAGCCGCCAGTTGGCAACGATGATGAGCGCC
GGCGTACCGCTGGTTCAAGCTTTCGACATCGTCGGACGTGGCCACGAGAATCCGAGCATGCAGGACCTGATCTTGGGCAT
CAAAGCCGATATCGAAGGCGGTAGCCCGCTAGCCGAGGCTTTGGGTAAACATCCCGTCTATTTCGACGAGCTGTTCTGTA
ATCTGGTACATGCCGGCGAACAGGCCGGCGTTCTCGAAACCCTGTTGCACAAGATCGCCGAATACAAGGAAAAGACCGAA
TCACTCAAAGCCAAGATCAAGAAAGCCTTGACTTATCCGACGGCCGTCATCGTCGTCGCCTGCATTGTAACGGCCATTCT
GCTGATCTTCGTCGTACCAACCTTCGAGGAATTGTTCAAAGGTTTTGGCGCTGATCTTCCGGCGTTCACACAAATGGTCA
TCGAGCTGTCACGCTTTCTGCAGTCATCTTGGTATATCGTATTAGGGGTCCTCATCGTTATCGGCATCGTATTCGTGAAG
CTCAAACAGCGATCTCCGGCGTTCAATCAAGCCCTGGATCGACTGTTGCTCCATATACCCGCGATCGGCACTATTGTGCA
CAAGGCAGCAATTTCCCGCTTCGCCCGAACGCTGGCAACCATGTCGGCGGCCGGCGTGCCTTTGGTTGAGGCGCTAAGAT
CGGTGGCAGGCGCAACCGGTAATATCATCTATTCCAATGCGGTTCTCAAAATGCGTGACGAAGTCGCCACCGGGCACCAG
CTTCAGCTCTGCATGCGTCAGGCCAATCTGTTCCCGAATATGGTCATACAGATGGTTGCCATCGGCGAGGAATCCGGCTC
CCTCGATAGCATGTTGGCGAAAGTCGCCGATTTCTACGAAGAGGAAGTGGACAACGCCGTCGATTCGCTCAGCAGCCTGC
TCGAACCCATGATCATGGCGTTCTTGGGTGTCATTGTTGGCGGTTTGGTGATCGCCATGTACCTGCCGATTTTCAAGCTC
GGCTCCGTGGTCTAA
ATGGCTAAAGAAGACGTTGTTTTGTTCGTTTGGGAAGGCGTCGACCGCACCGGCGGACGGCTCAAAGGCGAACTCGCCGC
GCGTACCGAAATCACCGCCAAGGCAGAACTCCGACGCCAGGGCATCAAAGTCGTCAAGATCAAGAAAAAGCCCAAACCAC
TCTTCAGTGGGCGAAAGAAAAAAATTACAACCAAGGACATCGCTGTATTCAGCCGCCAGTTGGCAACGATGATGAGCGCC
GGCGTACCGCTGGTTCAAGCTTTCGACATCGTCGGACGTGGCCACGAGAATCCGAGCATGCAGGACCTGATCTTGGGCAT
CAAAGCCGATATCGAAGGCGGTAGCCCGCTAGCCGAGGCTTTGGGTAAACATCCCGTCTATTTCGACGAGCTGTTCTGTA
ATCTGGTACATGCCGGCGAACAGGCCGGCGTTCTCGAAACCCTGTTGCACAAGATCGCCGAATACAAGGAAAAGACCGAA
TCACTCAAAGCCAAGATCAAGAAAGCCTTGACTTATCCGACGGCCGTCATCGTCGTCGCCTGCATTGTAACGGCCATTCT
GCTGATCTTCGTCGTACCAACCTTCGAGGAATTGTTCAAAGGTTTTGGCGCTGATCTTCCGGCGTTCACACAAATGGTCA
TCGAGCTGTCACGCTTTCTGCAGTCATCTTGGTATATCGTATTAGGGGTCCTCATCGTTATCGGCATCGTATTCGTGAAG
CTCAAACAGCGATCTCCGGCGTTCAATCAAGCCCTGGATCGACTGTTGCTCCATATACCCGCGATCGGCACTATTGTGCA
CAAGGCAGCAATTTCCCGCTTCGCCCGAACGCTGGCAACCATGTCGGCGGCCGGCGTGCCTTTGGTTGAGGCGCTAAGAT
CGGTGGCAGGCGCAACCGGTAATATCATCTATTCCAATGCGGTTCTCAAAATGCGTGACGAAGTCGCCACCGGGCACCAG
CTTCAGCTCTGCATGCGTCAGGCCAATCTGTTCCCGAATATGGTCATACAGATGGTTGCCATCGGCGAGGAATCCGGCTC
CCTCGATAGCATGTTGGCGAAAGTCGCCGATTTCTACGAAGAGGAAGTGGACAACGCCGTCGATTCGCTCAGCAGCCTGC
TCGAACCCATGATCATGGCGTTCTTGGGTGTCATTGTTGGCGGTTTGGTGATCGCCATGTACCTGCCGATTTTCAAGCTC
GGCTCCGTGGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
62.626 |
98.02 |
0.614 |
| pilC | Acinetobacter baumannii D1279779 |
59.446 |
98.267 |
0.584 |
| pilC | Acinetobacter baylyi ADP1 |
58.354 |
99.257 |
0.579 |
| pilC | Pseudomonas stutzeri DSM 10701 |
57.179 |
98.267 |
0.562 |
| pilG | Neisseria meningitidis 44/76-A |
49.118 |
98.267 |
0.483 |
| pilG | Neisseria gonorrhoeae MS11 |
48.866 |
98.267 |
0.48 |
| pilC | Vibrio campbellii strain DS40M4 |
43.073 |
98.267 |
0.423 |
| pilC | Vibrio cholerae strain A1552 |
42.462 |
98.515 |
0.418 |
| pilC | Thermus thermophilus HB27 |
37.59 |
100 |
0.386 |