Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SMUFR_RS09120 Genome accession   NZ_CP007016
Coordinates   1852652..1852966 (-) Length   104 a.a.
NCBI ID   WP_002263437.1    Uniprot ID   -
Organism   Streptococcus mutans UA159-FR     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847652..1857966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUFR_RS09080 (SMUFR_1714) - 1847719..1848159 (-) 441 WP_002263445.1 hypothetical protein -
  SMUFR_RS09085 (SMUFR_1715) - 1848128..1848373 (-) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  SMUFR_RS09090 (SMUFR_1716) - 1848942..1850141 (-) 1200 WP_002263443.1 acetate kinase -
  SMUFR_RS09095 (SMUFR_1717) comYH 1850200..1851153 (-) 954 WP_002263442.1 class I SAM-dependent methyltransferase Machinery gene
  SMUFR_RS09100 (SMUFR_1718) comYG 1851208..1851597 (-) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  SMUFR_RS09105 (SMUFR_1719) comYF 1851575..1852009 (-) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMUFR_RS09110 (SMUFR_1720) comYE 1851996..1852289 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  SMUFR_RS09115 (SMUFR_1721) comYD 1852261..1852665 (-) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMUFR_RS09120 (SMUFR_1722) comYC 1852652..1852966 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  SMUFR_RS09125 (SMUFR_1723) comYB 1852966..1853997 (-) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMUFR_RS09130 (SMUFR_1724) comYA 1853933..1854874 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  SMUFR_RS09135 (SMUFR_1725) - 1855004..1855387 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 10.2206

>NTDB_id=115800 SMUFR_RS09120 WP_002263437.1 1852652..1852966(-) (comYC) [Streptococcus mutans UA159-FR]
MKKIKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=115800 SMUFR_RS09120 WP_002263437.1 1852652..1852966(-) (comYC) [Streptococcus mutans UA159-FR]
ATGAAAAAGATCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

100

100

1
  comYC Streptococcus mutans UA159

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

55.446

97.115

0.538
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment