Detailed information NTG0115799

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SMUFR_RS09115
• Genome accession: NZ_CP007016
• Coordinates: 1852261..1852665 (-)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans UA159-FR
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1847261..1857665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUFR_RS09080 (SMUFR_1714)	-	1847719..1848159 (-)	441	WP_002263445.1	hypothetical protein	-
SMUFR_RS09085 (SMUFR_1715)	-	1848128..1848373 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
SMUFR_RS09090 (SMUFR_1716)	-	1848942..1850141 (-)	1200	WP_002263443.1	acetate kinase	-
SMUFR_RS09095 (SMUFR_1717)	comYH	1850200..1851153 (-)	954	WP_002263442.1	class I SAM-dependent methyltransferase	Machinery gene
SMUFR_RS09100 (SMUFR_1718)	comYG	1851208..1851597 (-)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMUFR_RS09105 (SMUFR_1719)	comYF	1851575..1852009 (-)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
SMUFR_RS09110 (SMUFR_1720)	comYE	1851996..1852289 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMUFR_RS09115 (SMUFR_1721)	comYD	1852261..1852665 (-)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMUFR_RS09120 (SMUFR_1722)	comYC	1852652..1852966 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
SMUFR_RS09125 (SMUFR_1723)	comYB	1852966..1853997 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMUFR_RS09130 (SMUFR_1724)	comYA	1853933..1854874 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
SMUFR_RS09135 (SMUFR_1725)	-	1855004..1855387 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=115799 SMUFR_RS09115 WP_002263438.1 1852261..1852665(-) (comYD) [Streptococcus mutans UA159-FR]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=115799 SMUFR_RS09115 WP_002263438.1 1852261..1852665(-) (comYD) [Streptococcus mutans UA159-FR]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388