Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OM978_RS18415 Genome accession   NZ_OX352320
Coordinates   3918900..3920120 (+) Length   406 a.a.
NCBI ID   WP_264343770.1    Uniprot ID   -
Organism   Rheinheimera sp. MM224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3913900..3925120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM978_RS18390 (JAMGFMIE_03699) - 3914305..3914823 (+) 519 WP_264343761.1 TIGR02281 family clan AA aspartic protease -
  OM978_RS18395 (JAMGFMIE_03700) nadC 3914872..3915741 (+) 870 WP_264343763.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OM978_RS18400 (JAMGFMIE_03701) - 3915858..3916508 (+) 651 WP_264343765.1 cold shock and DUF1294 domain-containing protein -
  OM978_RS18405 (JAMGFMIE_03702) - 3916703..3917080 (+) 378 WP_264343767.1 pilin -
  OM978_RS18410 (JAMGFMIE_03703) pilB 3917171..3918868 (+) 1698 WP_264343768.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OM978_RS18415 (JAMGFMIE_03704) pilC 3918900..3920120 (+) 1221 WP_264343770.1 type II secretion system F family protein Machinery gene
  OM978_RS18420 (JAMGFMIE_03705) pilD 3920120..3921001 (+) 882 WP_264343771.1 prepilin peptidase Machinery gene
  OM978_RS18425 (JAMGFMIE_03706) coaE 3921024..3921647 (+) 624 WP_264343772.1 dephospho-CoA kinase -
  OM978_RS18430 (JAMGFMIE_03707) zapD 3921686..3922432 (+) 747 WP_264343774.1 cell division protein ZapD -
  OM978_RS18435 (JAMGFMIE_03708) yacG 3922549..3922779 (+) 231 WP_147903582.1 DNA gyrase inhibitor YacG -
  OM978_RS18440 (JAMGFMIE_03709) mutT 3922847..3923251 (-) 405 WP_264343778.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43698.42 Da        Isoelectric Point: 9.4277

>NTDB_id=1155319 OM978_RS18415 WP_264343770.1 3918900..3920120(+) (pilC) [Rheinheimera sp. MM224]
MAEVKLKQLDIFLWKGINRRGKTSNGEIRAGSVAEAKALLRQQGFTPSSVKKKSKPLGFTKPSIKSSDISVVTRQIATML
GAGVPLVQSIDLIASGASNETLRQLMAKISVKVQGGTPLSEVLREHKDYFDELYCDLVKSGEQSGALDRIFDRIAIYKEK
AEALKSKIKKAMFYPIAVVVVAGIVTSILLIFVVPQFAEIFGNMGAELPAFTLFVLSISEFMQNYWYIVLGIVVATIVAM
SKSYKTSQSFKVGADHAILKLPIIGMILNKAAVARYARTLSTTFAAGVPLIEALESAAGAAGNEKYRAAILSVREEVAAG
NQMHLAMKNTAAFPEMVNQMVAIGEESGALDSMLSKVATIYEQEVDDAVDGLTALLEPLIMAVLGVLIGGLIIAMYLPIF
QLGSIV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1155319 OM978_RS18415 WP_264343770.1 3918900..3920120(+) (pilC) [Rheinheimera sp. MM224]
ATGGCCGAAGTAAAACTCAAGCAGCTGGATATCTTCCTGTGGAAAGGCATTAACAGAAGAGGTAAAACCAGCAACGGTGA
AATCAGAGCTGGTTCTGTGGCCGAGGCCAAAGCTTTGCTGCGGCAACAGGGTTTTACTCCGTCTTCAGTCAAGAAAAAAA
GCAAACCTCTGGGGTTCACTAAGCCATCGATTAAATCCTCTGATATCTCTGTCGTCACCCGGCAAATTGCCACTATGCTG
GGTGCTGGGGTGCCTTTAGTGCAAAGTATTGATCTGATTGCCAGTGGCGCCAGTAACGAAACCTTACGCCAGCTGATGGC
AAAAATTTCAGTCAAAGTGCAAGGCGGTACACCTTTATCCGAAGTCCTGCGTGAACACAAAGACTATTTTGACGAACTTT
ACTGCGATTTGGTCAAATCCGGTGAACAATCCGGTGCTCTGGACAGAATTTTTGACCGCATAGCCATTTACAAAGAAAAA
GCTGAAGCACTGAAATCTAAAATTAAAAAAGCCATGTTTTACCCTATAGCGGTAGTAGTGGTTGCAGGCATAGTCACCTC
AATTCTATTGATTTTTGTGGTGCCACAGTTCGCTGAAATTTTTGGCAATATGGGCGCAGAACTACCTGCTTTTACCTTGT
TTGTGTTGAGCATTTCCGAATTTATGCAAAATTATTGGTACATAGTATTAGGAATTGTGGTGGCAACCATAGTGGCTATG
TCAAAATCCTATAAAACCAGCCAGAGCTTTAAAGTAGGCGCCGATCACGCCATTTTGAAACTGCCTATTATCGGTATGAT
TTTAAATAAAGCGGCGGTCGCGCGTTACGCCCGAACTTTATCCACTACTTTTGCGGCCGGTGTGCCTTTGATTGAGGCTT
TGGAATCTGCGGCAGGAGCTGCGGGTAATGAAAAATACCGGGCTGCTATTTTGTCAGTGCGCGAAGAAGTCGCTGCGGGT
AATCAAATGCATTTGGCGATGAAAAATACCGCGGCTTTCCCTGAGATGGTGAACCAGATGGTGGCGATAGGTGAAGAGTC
TGGCGCACTGGACAGTATGCTGTCCAAGGTGGCGACTATCTATGAACAGGAAGTGGATGATGCAGTGGATGGCTTAACTG
CCTTGCTTGAACCCTTGATTATGGCGGTATTAGGTGTCTTAATAGGCGGACTTATTATTGCGATGTATCTTCCGATCTTC
CAACTGGGCAGTATTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.665

100

0.557
  pilC Legionella pneumophila strain ERS1305867

54.798

97.537

0.534
  pilC Acinetobacter baumannii D1279779

52.941

100

0.532
  pilC Acinetobacter baylyi ADP1

50.735

100

0.51
  pilC Vibrio cholerae strain A1552

45.113

98.276

0.443
  pilC Vibrio campbellii strain DS40M4

43.781

99.015

0.433
  pilG Neisseria meningitidis 44/76-A

42.338

94.828

0.401
  pilG Neisseria gonorrhoeae MS11

42.078

94.828

0.399
  pilC Thermus thermophilus HB27

38.213

99.261

0.379

Multiple sequence alignment