Detailed information NTG1155320

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OM978_RS18420
• Genome accession: NZ_OX352320
• Coordinates: 3920120..3921001 (+)
• Length: 293 a.a.
• NCBI ID: WP_264343771.1
• Uniprot ID: -
• Organism: Rheinheimera sp. MM224
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3915120..3926001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OM978_RS18400 (JAMGFMIE_03701)	-	3915858..3916508 (+)	651	WP_264343765.1	cold shock and DUF1294 domain-containing protein	-
OM978_RS18405 (JAMGFMIE_03702)	-	3916703..3917080 (+)	378	WP_264343767.1	pilin	-
OM978_RS18410 (JAMGFMIE_03703)	pilB	3917171..3918868 (+)	1698	WP_264343768.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OM978_RS18415 (JAMGFMIE_03704)	pilC	3918900..3920120 (+)	1221	WP_264343770.1	type II secretion system F family protein	Machinery gene
OM978_RS18420 (JAMGFMIE_03705)	pilD	3920120..3921001 (+)	882	WP_264343771.1	prepilin peptidase	Machinery gene
OM978_RS18425 (JAMGFMIE_03706)	coaE	3921024..3921647 (+)	624	WP_264343772.1	dephospho-CoA kinase	-
OM978_RS18430 (JAMGFMIE_03707)	zapD	3921686..3922432 (+)	747	WP_264343774.1	cell division protein ZapD	-
OM978_RS18435 (JAMGFMIE_03708)	yacG	3922549..3922779 (+)	231	WP_147903582.1	DNA gyrase inhibitor YacG	-
OM978_RS18440 (JAMGFMIE_03709)	mutT	3922847..3923251 (-)	405	WP_264343778.1	8-oxo-dGTP diphosphatase MutT	-
OM978_RS18445 (JAMGFMIE_03710)	secA	3923255..3925966 (-)	2712	WP_264343780.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32597.88 Da
• Isoelectric Point: 8.0181

>NTDB_id=1155320 OM978_RS18420 WP_264343771.1 3920120..3921001(+) (pilD) [Rheinheimera sp. MM224]
MDFFSPLVQVFEQSVLTFYIIVTLFSLAVGSFLNVVIYRLPKMMELAWQQDYQQYFSQNAEQTKTRFNLALPHSHCPKCQ
HQLSALDNIPLVSWLLLKAKCRYCKAPISVRYPAIEAFTGLLSLLVAMHFGVTEQTLIYLLVTWCLIALSFIDIDKMLLP
DQITQPLLWFALLLSVTGFTVSPTDSLIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAIFGALLGWQLLPLIILLS
SVVGAVLGSLMLLIQGKGKATPIPFGPYIAAAGWIAILWGKDITAWYLGTMGL

Nucleotide

• Length: 882 bp

>NTDB_id=1155320 OM978_RS18420 WP_264343771.1 3920120..3921001(+) (pilD) [Rheinheimera sp. MM224]
ATGGATTTTTTCTCTCCTCTGGTACAAGTGTTCGAACAGTCTGTACTTACTTTTTATATCATAGTGACGCTTTTTAGTCT
TGCAGTTGGCAGTTTCCTCAACGTGGTGATCTACAGATTACCTAAAATGATGGAATTGGCCTGGCAACAGGATTATCAAC
AGTACTTTAGTCAAAACGCCGAGCAGACCAAAACCAGATTTAATCTGGCTTTACCGCATTCACATTGCCCTAAATGTCAG
CATCAGCTCTCTGCTCTGGATAATATTCCACTGGTCAGCTGGCTGCTGTTAAAGGCCAAATGCCGTTATTGTAAAGCCCC
TATCAGTGTGCGTTATCCGGCTATTGAAGCATTTACGGGCTTGTTGTCTCTGCTGGTCGCTATGCATTTTGGTGTGACAG
AACAGACCCTGATTTATTTGCTGGTCACCTGGTGCCTGATTGCCTTGTCCTTTATTGATATCGATAAAATGTTGTTGCCG
GATCAGATCACTCAGCCGCTGCTCTGGTTTGCCTTATTACTCAGCGTCACAGGCTTTACTGTGTCCCCCACCGACTCATT
GATAGGCGCTGCTGCAGGTTACTTAAGTTTATGGTCGGTATTCTGGTTATTTAAACTGGTCACAGGTAAAGAAGGCATGG
GTTATGGTGACTTTAAACTGCTGGCTATTTTTGGCGCCCTGCTCGGCTGGCAATTATTGCCATTAATTATTTTATTATCT
TCCGTGGTAGGTGCTGTGTTGGGTTCGCTGATGCTACTGATACAGGGCAAAGGCAAAGCAACGCCTATTCCTTTTGGACC
CTATATCGCGGCGGCTGGCTGGATTGCGATTTTATGGGGCAAGGATATTACTGCCTGGTATCTGGGTACTATGGGTCTTT
AG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	93.857	0.515
pilD	Vibrio campbellii strain DS40M4	52.448	97.611	0.512
pilD	Acinetobacter baumannii D1279779	51.049	97.611	0.498
pilD	Acinetobacter nosocomialis M2	50.35	97.611	0.491
pilD	Neisseria gonorrhoeae MS11	45.312	87.372	0.396