Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ONG87_RS17600 Genome accession   NZ_OX352319
Coordinates   3872672..3873886 (+) Length   404 a.a.
NCBI ID   WP_264381753.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3867672..3878886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS17565 (AHFPHNDE_03495) - 3867892..3868659 (+) 768 WP_264381750.1 hypothetical protein -
  ONG87_RS17570 (AHFPHNDE_03496) - 3868656..3869066 (-) 411 WP_264381751.1 VOC family protein -
  ONG87_RS17575 (AHFPHNDE_03497) - 3869538..3869843 (+) 306 WP_192137714.1 DUF1484 family protein -
  ONG87_RS17590 pilE 3870256..3870681 (+) 426 WP_301335539.1 pilin Machinery gene
  ONG87_RS17595 (AHFPHNDE_03500) pilB 3870968..3872668 (+) 1701 WP_264381752.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ONG87_RS17600 pilC 3872672..3873886 (+) 1215 WP_264381753.1 type II secretion system F family protein Machinery gene
  ONG87_RS17605 (AHFPHNDE_03502) pilD 3873888..3874757 (+) 870 WP_264381754.1 A24 family peptidase Machinery gene
  ONG87_RS17610 (AHFPHNDE_03503) coaE 3874754..3875377 (+) 624 WP_264381755.1 dephospho-CoA kinase -
  ONG87_RS17615 (AHFPHNDE_03504) yacG 3875374..3875577 (+) 204 WP_192102642.1 DNA gyrase inhibitor YacG -
  ONG87_RS17620 (AHFPHNDE_03505) - 3875767..3876192 (-) 426 WP_264381756.1 DUF3830 family protein -
  ONG87_RS17625 (AHFPHNDE_03506) - 3876293..3876922 (+) 630 WP_122475299.1 DUF1780 domain-containing protein -
  ONG87_RS17630 (AHFPHNDE_03507) - 3877252..3878553 (+) 1302 WP_122795377.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43776.56 Da        Isoelectric Point: 10.0856

>NTDB_id=1155291 ONG87_RS17600 WP_264381753.1 3872672..3873886(+) (pilC) [Pseudomonas sp. MM227]
MAGKAKTSVYTWEGVDRKGIIAKGETSGTSLPLIRAQLRKQGITATKIRKRSIPLFGKGKRIKPADIALFTRQMATMMRA
GVPLLQSFDIIAEGVDNPNMRTLVEGIKQEVAAGNSFATSLRKKPEYFDDLYCSLVNAGEQAGALETLLDRVATYKEKTE
ALKAKIKKAMTYPIAVVVVAIIVSAILLIKVVPQFESVFAGFGAELPAFTLMVMGLSKIVQDWWLIILAGMVGLFFFIKH
TNKRSEKFRDGKDRTLLKVPIVGQILYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVNSIKQDVSNGSP
MHQSMRSTGVFPTLAIQMTAIGEESGALDDMLDRVATIYEAEVDNMVDSLTSLMEPMIMAVLGVVVGGLVIAMYLPIFQL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1155291 ONG87_RS17600 WP_264381753.1 3872672..3873886(+) (pilC) [Pseudomonas sp. MM227]
ATGGCAGGCAAAGCGAAGACCTCGGTATACACGTGGGAAGGCGTAGACCGGAAAGGTATAATTGCCAAAGGTGAAACGAG
CGGAACTAGCTTACCTTTGATACGTGCTCAATTGCGCAAACAGGGCATTACCGCTACGAAAATCCGCAAACGTTCGATTC
CTCTATTTGGCAAGGGAAAGAGGATAAAGCCGGCAGACATTGCACTATTCACACGTCAAATGGCTACCATGATGCGCGCC
GGTGTTCCTCTATTGCAATCGTTTGATATTATCGCTGAGGGTGTCGACAATCCTAACATGCGAACGTTGGTGGAGGGAAT
AAAACAAGAAGTTGCAGCCGGTAACAGCTTTGCAACATCTCTCCGAAAAAAACCCGAATACTTTGATGACCTGTATTGCA
GCTTGGTTAACGCAGGCGAGCAGGCTGGCGCACTTGAAACCCTTCTAGATCGCGTAGCGACATATAAAGAAAAAACAGAA
GCACTAAAGGCTAAAATCAAGAAAGCCATGACTTACCCTATAGCCGTAGTGGTCGTAGCCATTATAGTTTCTGCCATACT
TCTAATCAAAGTAGTTCCTCAATTTGAGTCTGTTTTTGCTGGGTTTGGTGCCGAGCTGCCCGCATTTACACTGATGGTTA
TGGGGCTATCAAAGATAGTCCAAGATTGGTGGTTAATAATACTCGCCGGAATGGTAGGTTTGTTTTTTTTTATAAAACAC
ACAAACAAGCGAAGTGAGAAGTTTCGCGACGGCAAAGACAGGACCTTACTGAAAGTTCCAATCGTGGGTCAAATCCTTTA
TAAATCGGCAGTTGCTAGATACGCTCGCACACTTTCCACCACTTTCGCTGCAGGCGTTCCATTAGTCGAGGCGCTTGACT
CAGTAGCAGGCGCTACTGGGAACGTCGTATTTAGAAATGCCGTTAACTCGATTAAGCAGGACGTATCCAATGGTTCGCCC
ATGCATCAATCCATGCGCTCCACTGGGGTCTTCCCCACCCTTGCCATCCAAATGACCGCCATCGGCGAAGAATCCGGCGC
TCTGGACGACATGCTCGACCGCGTAGCAACCATCTACGAAGCCGAAGTCGACAACATGGTCGACAGCCTCACCAGCCTCA
TGGAGCCGATGATCATGGCGGTACTGGGCGTGGTGGTCGGTGGCCTGGTTATTGCGATGTACCTCCCCATCTTCCAACTC
GGCTCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.556

100

0.757
  pilC Acinetobacter baumannii D1279779

59.194

98.267

0.582
  pilC Acinetobacter baylyi ADP1

58.209

99.505

0.579
  pilC Legionella pneumophila strain ERS1305867

52.525

98.02

0.515
  pilC Vibrio campbellii strain DS40M4

44

99.01

0.436
  pilC Vibrio cholerae strain A1552

43.687

98.02

0.428
  pilG Neisseria meningitidis 44/76-A

44.416

95.297

0.423
  pilG Neisseria gonorrhoeae MS11

44.156

95.297

0.421
  pilC Thermus thermophilus HB27

36.908

99.257

0.366

Multiple sequence alignment