Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ONG87_RS17605 Genome accession   NZ_OX352319
Coordinates   3873888..3874757 (+) Length   289 a.a.
NCBI ID   WP_264381754.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3868888..3879757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS17575 (AHFPHNDE_03497) - 3869538..3869843 (+) 306 WP_192137714.1 DUF1484 family protein -
  ONG87_RS17590 pilE 3870256..3870681 (+) 426 WP_301335539.1 pilin Machinery gene
  ONG87_RS17595 (AHFPHNDE_03500) pilB 3870968..3872668 (+) 1701 WP_264381752.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ONG87_RS17600 pilC 3872672..3873886 (+) 1215 WP_264381753.1 type II secretion system F family protein Machinery gene
  ONG87_RS17605 (AHFPHNDE_03502) pilD 3873888..3874757 (+) 870 WP_264381754.1 A24 family peptidase Machinery gene
  ONG87_RS17610 (AHFPHNDE_03503) coaE 3874754..3875377 (+) 624 WP_264381755.1 dephospho-CoA kinase -
  ONG87_RS17615 (AHFPHNDE_03504) yacG 3875374..3875577 (+) 204 WP_192102642.1 DNA gyrase inhibitor YacG -
  ONG87_RS17620 (AHFPHNDE_03505) - 3875767..3876192 (-) 426 WP_264381756.1 DUF3830 family protein -
  ONG87_RS17625 (AHFPHNDE_03506) - 3876293..3876922 (+) 630 WP_122475299.1 DUF1780 domain-containing protein -
  ONG87_RS17630 (AHFPHNDE_03507) - 3877252..3878553 (+) 1302 WP_122795377.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31993.33 Da        Isoelectric Point: 8.0333

>NTDB_id=1155292 ONG87_RS17605 WP_264381754.1 3873888..3874757(+) (pilD) [Pseudomonas sp. MM227]
MLLLEFLASPLALMFCALLLGLIIGSFLNVLIHRLPIMLDRDWTTQSREMLGLPPEPKGAAYNLLLPHSECPHCAHKIRA
WENIPVVSYLMLRGKCASCRAKISLRYPLVELATGLLSAFVVYHFGLSWQAGAFLLLTWGLLAMSLIDADQQLLPDVLVL
PLLWLGLIVNGQGLFTNLYDALWGAVAGYLSLWLVYWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVLMLRMRNAQTSTPIPFGPYLAIAGWIALLWGDQITTSYMQFAGFR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1155292 ONG87_RS17605 WP_264381754.1 3873888..3874757(+) (pilD) [Pseudomonas sp. MM227]
ATGCTCCTACTCGAATTCCTGGCCAGCCCGCTGGCCCTGATGTTCTGCGCCCTCCTCTTGGGCCTCATCATCGGCAGCTT
CCTCAACGTCCTCATCCATCGCCTGCCCATCATGCTCGACCGTGACTGGACCACACAGTCCCGGGAAATGCTTGGCCTGC
CGCCAGAACCAAAAGGCGCGGCGTACAACCTGCTGCTGCCCCACTCCGAATGCCCGCACTGTGCCCACAAGATCCGCGCC
TGGGAGAACATCCCGGTGGTGAGCTACCTGATGCTGCGGGGCAAGTGTGCCAGTTGTCGGGCGAAGATCAGCCTGCGTTA
TCCGCTGGTGGAACTGGCCACGGGCCTCTTGAGTGCCTTTGTGGTGTATCACTTCGGCTTGAGCTGGCAGGCCGGTGCGT
TTCTGCTGCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGATGCCGATCAGCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGTTGCTGTGGCTGGGGTTGATCGTCAATGGCCAGGGGTTGTTTACCAATCTCTACGACGCGCTGTGGGGCGCGGTGGC
GGGTTATCTGAGCCTGTGGCTGGTGTATTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGCGATTTCA
AGTTGCTGGCCATGCTCGGGGCTTGGGGTGGCTGGCAGATTTTGCCGCTGACCATTCTGTTGTCGTCGCTGGTGGGGGCG
GTGCTGGGGGTGTTGATGCTGCGGATGCGCAACGCGCAAACCAGTACGCCTATCCCGTTCGGGCCTTATCTGGCCATCGC
GGGGTGGATTGCATTGCTGTGGGGTGATCAAATAACCACTTCATACATGCAGTTTGCCGGGTTCCGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

51.786

96.886

0.502
  pilD Vibrio cholerae strain A1552

53.309

94.118

0.502
  pilD Acinetobacter nosocomialis M2

51.429

96.886

0.498
  pilD Vibrio campbellii strain DS40M4

49.643

96.886

0.481
  pilD Neisseria gonorrhoeae MS11

50.923

93.772

0.478

Multiple sequence alignment