Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QML77_RS07160 Genome accession   NZ_OX346407
Coordinates   1399980..1400408 (-) Length   142 a.a.
NCBI ID   WP_047338779.1    Uniprot ID   A0A1Y4QXL8
Organism   Enterococcus cecorum isolate CIRMBP-1274     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1394980..1405408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML77_RS07090 (CIRMBP1274_01416) - 1395436..1395654 (-) 219 WP_087215151.1 hypothetical protein -
  QML77_RS07095 (CIRMBP1274_01417) - 1395641..1395889 (-) 249 WP_281957193.1 hypothetical protein -
  QML77_RS07100 (CIRMBP1274_01418) - 1395876..1396121 (-) 246 WP_171312500.1 hypothetical protein -
  QML77_RS07105 (CIRMBP1274_01419) - 1396241..1396555 (-) 315 WP_281957194.1 hypothetical protein -
  QML77_RS07110 (CIRMBP1274_01420) - 1396539..1396937 (-) 399 WP_281957195.1 hypothetical protein -
  QML77_RS07115 (CIRMBP1274_01421) - 1396956..1397174 (-) 219 WP_281957196.1 hypothetical protein -
  QML77_RS07120 (CIRMBP1274_01422) - 1397193..1397681 (-) 489 WP_281957198.1 hypothetical protein -
  QML77_RS07125 (CIRMBP1274_01423) - 1397674..1397841 (-) 168 WP_162607288.1 hypothetical protein -
  QML77_RS07130 (CIRMBP1274_01424) - 1397903..1398040 (-) 138 WP_161794353.1 hypothetical protein -
  QML77_RS07135 (CIRMBP1274_01425) - 1398062..1398424 (-) 363 WP_087215119.1 hypothetical protein -
  QML77_RS07140 (CIRMBP1274_01426) - 1398441..1398899 (-) 459 WP_087215116.1 hypothetical protein -
  QML77_RS07145 (CIRMBP1274_01427) - 1398910..1399422 (-) 513 WP_143349855.1 thioredoxin -
  QML77_RS07150 (CIRMBP1274_01428) - 1399419..1399781 (-) 363 WP_047338778.1 hypothetical protein -
  QML77_RS07155 (CIRMBP1274_01429) - 1399810..1399965 (-) 156 WP_162607287.1 hypothetical protein -
  QML77_RS07160 (CIRMBP1274_01430) ssbA 1399980..1400408 (-) 429 WP_047338779.1 single-stranded DNA-binding protein Machinery gene
  QML77_RS07165 (CIRMBP1274_01431) - 1400463..1402106 (-) 1644 WP_281957199.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15949.81 Da        Isoelectric Point: 4.5692

>NTDB_id=1155163 QML77_RS07160 WP_047338779.1 1399980..1400408(-) (ssbA) [Enterococcus cecorum isolate CIRMBP-1274]
MINSVSLTGRLIREVDLRYSKTGKPVAQFTLAVNRKYPDQNGERQADFIRCIIWGKSAEALEKYTQKGSLIGVEGRIQTR
NYTNSQGKRVYLTEVVAQDFVFLESKGTAESRNGAGIATDYEDDLPDLDMGVEEFSDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1155163 QML77_RS07160 WP_047338779.1 1399980..1400408(-) (ssbA) [Enterococcus cecorum isolate CIRMBP-1274]
ATGATCAATTCAGTCAGTTTAACAGGAAGACTAATTAGGGAGGTGGATTTGAGATATTCCAAAACAGGAAAGCCAGTTGC
TCAATTTACATTAGCAGTCAATCGTAAGTACCCAGATCAAAATGGCGAACGACAAGCAGATTTTATTCGTTGTATTATCT
GGGGCAAGAGTGCTGAAGCTTTAGAAAAGTATACACAAAAAGGTTCATTGATTGGTGTAGAAGGACGTATTCAGACACGT
AATTATACGAACAGTCAAGGAAAGAGAGTGTATTTAACAGAAGTTGTTGCTCAAGATTTTGTGTTTTTAGAATCAAAAGG
AACTGCTGAAAGTCGAAATGGTGCAGGAATCGCAACGGATTACGAGGACGATTTACCAGACTTAGATATGGGTGTAGAAG
AGTTTTCAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y4QXL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

40.116

100

0.486
  ssb Latilactobacillus sakei subsp. sakei 23K

54.839

87.324

0.479
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.056

100

0.444
  ssbB/cilA Streptococcus mitis NCTC 12261

44.056

100

0.444
  ssbB/cilA Streptococcus pneumoniae D39

43.357

100

0.437
  ssbB/cilA Streptococcus pneumoniae R6

43.357

100

0.437
  ssbB/cilA Streptococcus pneumoniae Rx1

43.357

100

0.437
  ssbB/cilA Streptococcus mitis SK321

41.958

100

0.423
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.275

92.254

0.408
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.943

74.648

0.38
  ssbA Streptococcus mutans UA159

37.324

100

0.373

Multiple sequence alignment