Detailed information NTG1154744

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OGY80_RS02615
• Genome accession: NZ_OX336253
• Coordinates: 547673..548803 (+)
• Length: 376 a.a.
• NCBI ID: WP_263337162.1
• Uniprot ID: -
• Organism: Neisseria sp. Marseille-Q5346
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 542673..553803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGY80_RS02595	-	542891..543769 (+)	879	WP_263337147.1	DMT family transporter	-
OGY80_RS02600	lepB	543823..544842 (-)	1020	WP_107791935.1	signal peptidase I	-
OGY80_RS02605	lepA	544842..546635 (-)	1794	WP_107791936.1	translation elongation factor 4	-
OGY80_RS02610	-	546768..547469 (-)	702	WP_263337157.1	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	-
OGY80_RS02615	pilU	547673..548803 (+)	1131	WP_263337162.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OGY80_RS02620	-	548878..550284 (-)	1407	WP_263337165.1	dihydrolipoyl dehydrogenase	-
OGY80_RS02625	-	550537..551274 (-)	738	WP_004520136.1	redoxin family protein	-
OGY80_RS02630	-	551463..552248 (-)	786	WP_263337177.1	1-acylglycerol-3-phosphate O-acyltransferase	-
OGY80_RS02635	mutM	552313..553140 (-)	828	WP_263341816.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42470.60 Da
• Isoelectric Point: 5.6785

>NTDB_id=1154744 OGY80_RS02615 WP_263337162.1 547673..548803(+) (pilU) [Neisseria sp. Marseille-Q5346]
MFDENTPGAKEELFTWLRHMNKYKGSDLFITTNFPPAMKVDGKIMRLTDEPLSAEKCMEIAFSIMSSKQIEEFSTTNECN
FAISLPDTSRFRVNAMVQRGATALVFRSITSNIPKFETLNLPPILKDIALRKRGLIIFVGGTGSGKSTSLASLIDYRNEN
SFDHIITIEDPIEFIHQHKNCIITQREIGVDTENWPIALKNTLRQAPDVILIGEIRDRETMDYAISFAETGHLCMATLHA
NSTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPRESGRGRVAAVEVLLNSPIIADLIQKGEVHNIKEMMKKST
GMGMITFDQALYDLYENGDISYQDAIKNADSSHDLRLDIQLRSRRAQNAGPDLELI

Nucleotide

• Length: 1131 bp

>NTDB_id=1154744 OGY80_RS02615 WP_263337162.1 547673..548803(+) (pilU) [Neisseria sp. Marseille-Q5346]
ATGTTTGACGAAAATACTCCGGGCGCAAAAGAAGAATTGTTCACTTGGCTACGCCACATGAACAAATACAAAGGCTCCGA
CCTTTTCATTACCACTAATTTCCCGCCGGCCATGAAAGTGGACGGCAAAATCATGCGGCTGACCGATGAGCCGTTAAGCG
CTGAAAAATGTATGGAAATCGCTTTTTCGATTATGTCTTCCAAACAAATCGAAGAATTTTCTACCACCAACGAATGCAAT
TTCGCCATCAGTCTACCCGATACCAGCCGCTTCCGTGTCAATGCAATGGTTCAACGCGGCGCAACTGCTTTGGTGTTCCG
CTCCATTACCAGCAATATCCCTAAATTTGAAACGCTCAATCTGCCACCGATTCTGAAAGACATTGCCCTCAGAAAACGCG
GCCTGATTATTTTTGTCGGTGGTACAGGTTCGGGCAAGTCCACTTCCCTTGCCTCCCTTATCGACTATCGAAACGAAAAC
AGCTTCGACCACATTATCACCATCGAAGACCCGATTGAGTTTATCCACCAACACAAAAACTGCATCATTACCCAACGTGA
AATCGGCGTAGATACCGAAAATTGGCCGATTGCATTGAAAAATACCCTGCGCCAAGCACCGGATGTTATCCTGATTGGTG
AAATCCGAGACCGCGAGACCATGGACTACGCCATTTCCTTCGCGGAAACCGGCCATTTGTGTATGGCGACACTGCACGCC
AACAGTACCAACCAAGCGCTCGACCGCATCATCAACTTCTTCCCCGAAGAGCGCCGTACCCAGTTGCTAACCGACTTATC
GCTCAACCTGCAAGCCTTTATTTCACAACGACTGATTCCCCGTGAAAGCGGACGGGGTCGTGTGGCGGCGGTTGAAGTTT
TGCTCAATTCGCCAATTATTGCCGACTTGATTCAAAAAGGCGAAGTCCACAACATCAAAGAAATGATGAAAAAATCAACC
GGCATGGGCATGATCACTTTTGACCAAGCCTTGTATGATTTATATGAAAACGGCGATATCAGCTATCAAGACGCTATTAA
AAATGCCGACTCCTCCCATGATTTGCGCTTAGATATTCAATTACGAAGCCGTCGTGCACAAAATGCCGGTCCGGATTTAG
AATTGATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (43-258)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.511	93.617	0.566
pilU	Acinetobacter baylyi ADP1	57.726	91.223	0.527
pilU	Vibrio cholerae strain A1552	52.646	95.479	0.503
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.243	88.564	0.383
pilT	Acinetobacter nosocomialis M2	42.593	86.17	0.367
pilT	Acinetobacter baumannii D1279779	42.593	86.17	0.367
pilT	Acinetobacter baumannii strain A118	42.593	86.17	0.367
pilT	Legionella pneumophila strain Lp02	41.975	86.17	0.362
pilT	Legionella pneumophila strain ERS1305867	41.975	86.17	0.362
pilT	Acinetobacter baylyi ADP1	41.463	87.234	0.362