Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VPUCM_RS13030 | Genome accession | NZ_CP007004 |
| Coordinates | 2825983..2826402 (+) | Length | 139 a.a. |
| NCBI ID | WP_025442238.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus UCM-V493 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2820983..2831402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VPUCM_RS13015 (VPUCM_2606) | pdhR | 2823014..2823781 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VPUCM_RS13020 (VPUCM_2607) | ampD | 2824187..2824738 (-) | 552 | WP_025442236.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VPUCM_RS13025 (VPUCM_2608) | nadC | 2824831..2825718 (+) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VPUCM_RS13030 (VPUCM_2609) | pilA | 2825983..2826402 (+) | 420 | WP_025442238.1 | pilin | Machinery gene |
| VPUCM_RS13035 (VPUCM_2610) | pilB | 2826408..2828093 (+) | 1686 | WP_025442239.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VPUCM_RS13040 (VPUCM_2611) | pilC | 2828117..2829340 (+) | 1224 | WP_025442240.1 | type II secretion system F family protein | Machinery gene |
| VPUCM_RS13045 (VPUCM_2612) | pilD | 2829405..2830274 (+) | 870 | WP_025442241.1 | A24 family peptidase | Machinery gene |
| VPUCM_RS13050 (VPUCM_2613) | coaE | 2830275..2830889 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14239.23 Da Isoelectric Point: 4.9630
>NTDB_id=115457 VPUCM_RS13030 WP_025442238.1 2825983..2826402(+) (pilA) [Vibrio parahaemolyticus UCM-V493]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=115457 VPUCM_RS13030 WP_025442238.1 2825983..2826402(+) (pilA) [Vibrio parahaemolyticus UCM-V493]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
70.29 |
99.281 |
0.698 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.143 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |