Detailed information NTG0115460

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VPUCM_RS13045
• Genome accession: NZ_CP007004
• Coordinates: 2829405..2830274 (+)
• Length: 289 a.a.
• NCBI ID: WP_025442241.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus UCM-V493
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2824405..2835274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPUCM_RS13025 (VPUCM_2608)	nadC	2824831..2825718 (+)	888	WP_025442237.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VPUCM_RS13030 (VPUCM_2609)	pilA	2825983..2826402 (+)	420	WP_025442238.1	pilin	Machinery gene
VPUCM_RS13035 (VPUCM_2610)	pilB	2826408..2828093 (+)	1686	WP_025442239.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VPUCM_RS13040 (VPUCM_2611)	pilC	2828117..2829340 (+)	1224	WP_025442240.1	type II secretion system F family protein	Machinery gene
VPUCM_RS13045 (VPUCM_2612)	pilD	2829405..2830274 (+)	870	WP_025442241.1	A24 family peptidase	Machinery gene
VPUCM_RS13050 (VPUCM_2613)	coaE	2830275..2830889 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
VPUCM_RS13055 (VPUCM_2614)	zapD	2830917..2831657 (+)	741	WP_023624252.1	cell division protein ZapD	-
VPUCM_RS13060 (VPUCM_2615)	yacG	2831726..2831920 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
VPUCM_RS13065 (VPUCM_2616)	rplS	2832300..2832653 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
VPUCM_RS13070 (VPUCM_2617)	trmD	2832695..2833438 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VPUCM_RS13075 (VPUCM_2618)	rimM	2833466..2834014 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
VPUCM_RS13080 (VPUCM_2619)	rpsP	2834043..2834291 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.50 Da
• Isoelectric Point: 7.1970

>NTDB_id=115460 VPUCM_RS13045 WP_025442241.1 2829405..2830274(+) (pilD) [Vibrio parahaemolyticus UCM-V493]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=115460 VPUCM_RS13045 WP_025442241.1 2829405..2830274(+) (pilD) [Vibrio parahaemolyticus UCM-V493]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45