Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   NBW44_RS00750 Genome accession   NZ_OW724079
Coordinates   126343..126738 (+) Length   131 a.a.
NCBI ID   WP_250306797.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121343..131738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00715 - 122160..122393 (+) 234 WP_000368732.1 DUF1858 domain-containing protein -
  NBW44_RS00720 - 122393..123727 (+) 1335 WP_250306793.1 DUF438 domain-containing protein -
  NBW44_RS00725 - 123737..123991 (+) 255 WP_004251830.1 DUF1912 family protein -
  NBW44_RS00730 - 124227..124517 (+) 291 WP_024053819.1 DUF4651 domain-containing protein -
  NBW44_RS00735 - 124514..124831 (+) 318 WP_250306794.1 thioredoxin family protein -
  NBW44_RS00740 ytpR 124841..125467 (+) 627 WP_250306795.1 YtpR family tRNA-binding protein -
  NBW44_RS00745 - 125509..126270 (+) 762 WP_250306796.1 SDR family NAD(P)-dependent oxidoreductase -
  NBW44_RS00750 ssbB/cilA 126343..126738 (+) 396 WP_250306797.1 single-stranded DNA-binding protein Machinery gene
  NBW44_RS00755 - 126924..127907 (+) 984 WP_250306798.1 substrate-binding domain-containing protein -
  NBW44_RS00760 - 127907..129223 (+) 1317 WP_250306799.1 sensor histidine kinase -
  NBW44_RS00765 - 129230..129913 (+) 684 WP_004251853.1 response regulator transcription factor -
  NBW44_RS00770 - 129910..131208 (+) 1299 WP_250306800.1 sugar ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14791.71 Da        Isoelectric Point: 5.9409

>NTDB_id=1152577 NBW44_RS00750 WP_250306797.1 126343..126738(+) (ssbB/cilA) [Streptococcus sp. Marseille-Q3533]
MYNKVIMIGRLTSTPELHKTNNDKSVARVTIAINRRFKDQNGEREADFINIVVWGKLAETLASYASKGSLISVDGELRTR
KFEKNGQTNYVTEVVATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1152577 NBW44_RS00750 WP_250306797.1 126343..126738(+) (ssbB/cilA) [Streptococcus sp. Marseille-Q3533]
ATGTATAATAAAGTTATTATGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACTAACAACGACAAGTCAGTGGC
TCGTGTGACTATTGCCATTAACCGTCGTTTCAAGGACCAAAATGGGGAACGTGAAGCTGACTTCATCAATATTGTTGTCT
GGGGGAAATTGGCTGAAACTTTGGCTAGCTATGCAAGCAAAGGCAGTCTCATTTCTGTCGATGGGGAGCTCCGTACCCGT
AAGTTTGAGAAGAACGGTCAGACCAACTATGTGACCGAAGTTGTTGCCACAGGCTTCCAACTTTTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCTGGTCAAGACTTAGCAGATCTGGTTTTGGAAGAGGAGGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

90.84

100

0.908
  ssbB/cilA Streptococcus pneumoniae Rx1

90.84

100

0.908
  ssbB/cilA Streptococcus pneumoniae D39

90.84

100

0.908
  ssbB/cilA Streptococcus pneumoniae R6

90.84

100

0.908
  ssbB/cilA Streptococcus pneumoniae TIGR4

90.076

100

0.901
  ssbB/cilA Streptococcus mitis SK321

89.313

100

0.893
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

48.673

86.26

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42

Multiple sequence alignment