Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KJA91_RS03865 Genome accession   NZ_OD940420
Coordinates   789287..789739 (+) Length   150 a.a.
NCBI ID   WP_002368292.1    Uniprot ID   A0AAX2KKQ5
Organism   Enterococcus faecalis isolate WE0438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 784287..794739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJA91_RS03830 (WE0438_00780) - 785545..786318 (-) 774 WP_078127113.1 Cas9 inhibitor AcrIIA9 family protein -
  KJA91_RS03835 (WE0438_00781) - 786423..787013 (-) 591 WP_010712132.1 hypothetical protein -
  KJA91_RS03840 (WE0438_00782) - 787037..787228 (-) 192 WP_002393732.1 DpnD/PcfM family protein -
  KJA91_RS03845 (WE0438_00783) - 787213..787398 (-) 186 WP_010712133.1 hypothetical protein -
  KJA91_RS03850 (WE0438_00784) - 787404..787853 (-) 450 WP_174123587.1 PcfO -
  KJA91_RS03855 (WE0438_00785) - 788441..788671 (-) 231 WP_002360849.1 hypothetical protein -
  KJA91_RS03860 (WE0438_00786) - 788726..789220 (+) 495 WP_025189329.1 hypothetical protein -
  KJA91_RS03865 (WE0438_00787) ssb 789287..789739 (+) 453 WP_002368292.1 single-stranded DNA-binding protein Machinery gene
  KJA91_RS14645 (WE0438_00788) - 789753..789878 (+) 126 WP_010712135.1 hypothetical protein -
  KJA91_RS03870 (WE0438_00789) - 789917..790495 (+) 579 WP_010712136.1 thermonuclease family protein -
  KJA91_RS03875 (WE0438_00790) - 790587..790907 (+) 321 WP_010712137.1 hypothetical protein -
  KJA91_RS14745 - 791134..792579 (+) 1446 Protein_753 glucosyltransferase domain-containing protein -
  KJA91_RS03885 (WE0438_00792) - 792890..793531 (+) 642 WP_010712139.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16794.70 Da        Isoelectric Point: 4.9166

>NTDB_id=1150569 KJA91_RS03865 WP_002368292.1 789287..789739(+) (ssb) [Enterococcus faecalis isolate WE0438]
MINNVTLVGRLTKDCDLRYTSSGVAVAAFTLAVNRNFTNQNGEREADYIQCVIWRKPAETLANYTRKGTLIGLVGRLQTR
NYENQQGQRIYVTEVVVESFQLLESKEVSQQRGVNASNPTPVGQQESNTQQPFPDLEGSSIEISDHDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1150569 KJA91_RS03865 WP_002368292.1 789287..789739(+) (ssb) [Enterococcus faecalis isolate WE0438]
ATGATTAATAATGTGACTTTAGTAGGAAGACTTACAAAAGACTGTGATTTGCGTTATACGTCAAGTGGTGTAGCTGTTGC
GGCTTTTACACTAGCAGTTAACCGGAATTTTACAAATCAAAATGGTGAACGTGAAGCAGACTATATTCAGTGTGTGATTT
GGCGTAAACCTGCAGAAACTTTAGCAAACTATACACGAAAAGGAACATTGATTGGTCTTGTGGGTAGACTTCAAACACGT
AACTATGAGAATCAACAAGGACAACGTATTTATGTGACAGAAGTGGTTGTAGAAAGCTTCCAATTGTTAGAGTCAAAAGA
AGTTAGTCAACAACGTGGTGTTAACGCTTCTAATCCTACACCAGTTGGACAGCAGGAAAGCAATACGCAACAACCCTTTC
CAGATTTAGAAGGTAGTTCTATTGAGATTTCAGATCATGACTTACCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.023

100

0.6
  ssbB/cilA Streptococcus pneumoniae TIGR4

44

100

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

43.333

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

43.333

100

0.433
  ssbB/cilA Streptococcus pneumoniae D39

43.333

100

0.433
  ssbB/cilA Streptococcus pneumoniae R6

43.333

100

0.433
  ssbB/cilA Streptococcus mitis SK321

43.333

100

0.433
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

70.667

0.413
  ssbA Streptococcus mutans UA159

40

100

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.458

78.667

0.373

Multiple sequence alignment