Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE56_RS09225 Genome accession   NZ_LT992464
Coordinates   1746801..1747229 (-) Length   142 a.a.
NCBI ID   WP_016187439.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 3_LA_115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1713729..1756102 1746801..1747229 within 0


Gene organization within MGE regions


Location: 1713729..1756102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE56_RS08990 - 1713729..1714370 (-) 642 WP_001190816.1 hypothetical protein -
  DXE56_RS08995 - 1714385..1715047 (-) 663 WP_000385047.1 hypothetical protein -
  DXE56_RS09000 - 1715723..1717168 (-) 1446 WP_023180154.1 SH3 domain-containing protein -
  DXE56_RS09005 - 1717149..1717586 (-) 438 WP_000354128.1 phage holin -
  DXE56_RS15050 - 1717828..1718055 (-) 228 Protein_1680 BppU family phage baseplate upper protein -
  DXE56_RS09015 - 1718068..1719942 (-) 1875 WP_016187457.1 glucosaminidase domain-containing protein -
  DXE56_RS09020 - 1720079..1720378 (-) 300 WP_021285833.1 DUF2951 family protein -
  DXE56_RS09025 - 1720419..1720592 (-) 174 WP_001800921.1 XkdX family protein -
  DXE56_RS09030 - 1720602..1720979 (-) 378 WP_016187285.1 DUF2977 domain-containing protein -
  DXE56_RS09035 - 1720979..1722802 (-) 1824 WP_016187284.1 phage baseplate upper protein -
  DXE56_RS09040 - 1722802..1724700 (-) 1899 WP_016187283.1 hypothetical protein -
  DXE56_RS09045 - 1724713..1726599 (-) 1887 WP_016187282.1 SGNH/GDSL hydrolase family protein -
  DXE56_RS09050 - 1726610..1727551 (-) 942 WP_021285834.1 phage tail domain-containing protein -
  DXE56_RS09055 - 1727566..1730451 (-) 2886 WP_031903447.1 phage tail protein -
  DXE56_RS15190 - 1730455..1730604 (-) 150 WP_016187279.1 hypothetical protein -
  DXE56_RS09065 - 1730784..1731296 (-) 513 WP_000134336.1 tail assembly chaperone -
  DXE56_RS09070 - 1731363..1731920 (-) 558 WP_000057585.1 hypothetical protein -
  DXE56_RS09075 - 1731921..1732346 (-) 426 WP_031903446.1 DUF3168 domain-containing protein -
  DXE56_RS09080 - 1732359..1732772 (-) 414 WP_031903445.1 HK97-gp10 family putative phage morphogenesis protein -
  DXE56_RS09085 - 1732759..1733094 (-) 336 WP_021285837.1 phage head closure protein -
  DXE56_RS09090 - 1733106..1733456 (-) 351 WP_016187275.1 hypothetical protein -
  DXE56_RS15010 - 1733462..1733605 (-) 144 WP_000002930.1 hypothetical protein -
  DXE56_RS09095 - 1733617..1734531 (-) 915 WP_016187274.1 phage major capsid protein -
  DXE56_RS09100 - 1734548..1735132 (-) 585 WP_016187273.1 DUF4355 domain-containing protein -
  DXE56_RS09105 - 1735236..1735469 (-) 234 WP_000440857.1 hypothetical protein -
  DXE56_RS09110 - 1735473..1736423 (-) 951 WP_000184140.1 phage head morphogenesis protein -
  DXE56_RS09115 - 1736392..1737816 (-) 1425 WP_016187272.1 phage portal protein -
  DXE56_RS09120 - 1737813..1739036 (-) 1224 WP_001037578.1 PBSX family phage terminase large subunit -
  DXE56_RS09125 - 1739029..1739523 (-) 495 WP_000594088.1 terminase small subunit -
  DXE56_RS09130 - 1739854..1740276 (-) 423 WP_000162701.1 RinA family phage transcriptional activator -
  DXE56_RS09135 - 1740300..1740446 (-) 147 WP_000989998.1 hypothetical protein -
  DXE56_RS09140 rinB 1740447..1740620 (-) 174 WP_025176537.1 transcriptional activator RinB -
  DXE56_RS09145 - 1740613..1740816 (-) 204 WP_016187270.1 hypothetical protein -
  DXE56_RS09150 - 1740813..1741019 (-) 207 WP_000195770.1 DUF1381 domain-containing protein -
  DXE56_RS09155 - 1741056..1741562 (-) 507 WP_001066446.1 dUTP diphosphatase -
  DXE56_RS09160 - 1741555..1741725 (-) 171 WP_000714407.1 hypothetical protein -
  DXE56_RS09165 - 1741712..1741966 (-) 255 WP_071161936.1 DUF1024 family protein -
  DXE56_RS09170 - 1741959..1742267 (-) 309 WP_000144708.1 hypothetical protein -
  DXE56_RS09175 - 1742264..1742611 (-) 348 WP_071161935.1 YopX family protein -
  DXE56_RS09180 - 1742675..1742923 (-) 249 WP_078099314.1 SAV1978 family virulence-associated passenger protein -
  DXE56_RS09185 - 1742923..1743177 (-) 255 WP_031903464.1 DUF3310 domain-containing protein -
  DXE56_RS09190 - 1743177..1743536 (-) 360 WP_031903463.1 SA1788 family PVL leukocidin-associated protein -
  DXE56_RS09195 - 1743537..1743725 (-) 189 WP_031903462.1 DUF3113 family protein -
  DXE56_RS09200 - 1743730..1744135 (-) 406 Protein_1719 DUF1064 domain-containing protein -
  DXE56_RS09205 - 1744145..1744366 (-) 222 WP_001123688.1 DUF3269 family protein -
  DXE56_RS15055 - 1744379..1744540 (-) 162 WP_000237154.1 hypothetical protein -
  DXE56_RS09210 - 1744534..1745307 (-) 774 WP_000803049.1 ATP-binding protein -
  DXE56_RS09215 - 1745317..1746120 (-) 804 WP_000504986.1 phage replisome organizer N-terminal domain-containing protein -
  DXE56_RS09220 - 1746092..1746787 (-) 696 WP_015980404.1 putative HNHc nuclease -
  DXE56_RS09225 ssbA 1746801..1747229 (-) 429 WP_016187439.1 single-stranded DNA-binding protein Machinery gene
  DXE56_RS09230 - 1747229..1747867 (-) 639 WP_001043063.1 ERF family protein -
  DXE56_RS09235 - 1747867..1748346 (-) 480 WP_016187438.1 siphovirus Gp157 family protein -
  DXE56_RS09240 - 1748361..1748621 (-) 261 WP_021285962.1 DUF1108 family protein -
  DXE56_RS09245 - 1748626..1748928 (-) 303 WP_000163429.1 DUF2482 family protein -
  DXE56_RS09250 - 1749031..1749192 (-) 162 WP_000048124.1 DUF1270 family protein -
  DXE56_RS09255 - 1749185..1749406 (-) 222 WP_000977381.1 hypothetical protein -
  DXE56_RS15330 - 1749477..1749722 (+) 246 WP_016187267.1 hypothetical protein -
  DXE56_RS09265 - 1749690..1749893 (-) 204 Protein_1733 hypothetical protein -
  DXE56_RS09270 - 1749918..1750658 (-) 741 WP_001576117.1 phage antirepressor KilAC domain-containing protein -
  DXE56_RS09275 - 1750723..1750959 (+) 237 WP_021285963.1 hypothetical protein -
  DXE56_RS15060 - 1750952..1751113 (-) 162 WP_001153175.1 hypothetical protein -
  DXE56_RS09280 - 1751128..1751367 (-) 240 WP_016187264.1 helix-turn-helix domain-containing protein -
  DXE56_RS09285 - 1751559..1752233 (+) 675 WP_000142628.1 XRE family transcriptional regulator -
  DXE56_RS09290 - 1752285..1753268 (+) 984 WP_021285964.1 glycosyltransferase family 2 protein -
  DXE56_RS09295 - 1753279..1753521 (+) 243 WP_016187262.1 hypothetical protein -
  DXE56_RS09300 - 1753588..1754637 (+) 1050 WP_001145730.1 tyrosine-type recombinase/integrase -
  DXE56_RS09305 sufB 1754705..1756102 (-) 1398 WP_001074405.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16066.57 Da        Isoelectric Point: 5.8724

>NTDB_id=1149567 DXE56_RS09225 WP_016187439.1 1746801..1747229(-) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1149567 DXE56_RS09225 WP_016187439.1 1746801..1747229(-) (ssbA) [Staphylococcus aureus isolate 3_LA_115]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment