Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXE65_RS07045 Genome accession   NZ_LT992462
Coordinates   1331677..1332102 (-) Length   141 a.a.
NCBI ID   WP_000934384.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 5_3949     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1326677..1337102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE65_RS06995 - 1326698..1327057 (-) 360 WP_031838377.1 SA1788 family PVL leukocidin-associated protein -
  DXE65_RS07000 - 1327058..1327243 (-) 186 WP_031838378.1 DUF3113 family protein -
  DXE65_RS07005 - 1327248..1327652 (-) 405 WP_000049795.1 DUF1064 domain-containing protein -
  DXE65_RS07010 - 1327662..1327883 (-) 222 WP_001123688.1 DUF3269 family protein -
  DXE65_RS07015 - 1327886..1328101 (-) 216 WP_031794786.1 hypothetical protein -
  DXE65_RS07020 - 1328098..1329339 (-) 1242 WP_031914162.1 DnaB helicase C-terminal domain-containing protein -
  DXE65_RS07025 - 1329336..1329692 (-) 357 WP_001132243.1 hypothetical protein -
  DXE65_RS07030 - 1329692..1330447 (-) 756 WP_001037657.1 DnaD domain protein -
  DXE65_RS07035 - 1330440..1331114 (-) 675 WP_031775800.1 putative HNHc nuclease -
  DXE65_RS07040 - 1331115..1331666 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  DXE65_RS07045 ssbA 1331677..1332102 (-) 426 WP_000934384.1 single-stranded DNA-binding protein Machinery gene
  DXE65_RS07050 - 1332102..1332725 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  DXE65_RS07055 - 1332718..1332939 (-) 222 WP_000815402.1 DUF2483 family protein -
  DXE65_RS07060 - 1332949..1333209 (-) 261 WP_031886231.1 DUF1108 family protein -
  DXE65_RS07065 - 1333214..1333516 (-) 303 WP_000163429.1 DUF2482 family protein -
  DXE65_RS07070 - 1333619..1333780 (-) 162 WP_001285954.1 DUF1270 domain-containing protein -
  DXE65_RS07075 - 1333793..1334056 (-) 264 WP_001124190.1 helix-turn-helix domain-containing protein -
  DXE65_RS07080 - 1334081..1334296 (-) 216 WP_001036302.1 hypothetical protein -
  DXE65_RS07085 - 1334351..1334716 (+) 366 WP_001128433.1 hypothetical protein -
  DXE65_RS07090 - 1334685..1334930 (-) 246 WP_001025401.1 DUF2829 domain-containing protein -
  DXE65_RS07095 - 1334986..1335195 (+) 210 WP_000642492.1 hypothetical protein -
  DXE65_RS07100 - 1335185..1335328 (-) 144 WP_000939498.1 hypothetical protein -
  DXE65_RS07105 - 1335357..1336133 (-) 777 WP_001148544.1 Rha family transcriptional regulator -
  DXE65_RS07110 - 1336147..1336383 (-) 237 WP_001121027.1 helix-turn-helix domain-containing protein -
  DXE65_RS07115 - 1336535..1336849 (+) 315 WP_000333630.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15784.48 Da        Isoelectric Point: 8.4826

>NTDB_id=1149462 DXE65_RS07045 WP_000934384.1 1331677..1332102(-) (ssbA) [Staphylococcus aureus isolate 5_3949]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1149462 DXE65_RS07045 WP_000934384.1 1331677..1332102(-) (ssbA) [Staphylococcus aureus isolate 5_3949]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGTGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.729

83.688

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbA Streptococcus mutans UA159

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369

Multiple sequence alignment