Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   W903_RS01205 Genome accession   NZ_CP006910
Coordinates   201210..201605 (+) Length   131 a.a.
NCBI ID   WP_038406053.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 196210..206605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS01170 (W903_0239) proC 196609..197379 (-) 771 WP_001876660.1 pyrroline-5-carboxylate reductase -
  W903_RS01175 (W903_0240) pepA 197449..198516 (-) 1068 WP_001281322.1 glutamyl aminopeptidase -
  W903_RS01180 (W903_0241) - 198696..198935 (-) 240 WP_000660180.1 hypothetical protein -
  W903_RS01185 (W903_0242) - 199096..199380 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  W903_RS01190 (W903_0243) - 199377..199700 (+) 324 WP_000602780.1 thioredoxin family protein -
  W903_RS01195 (W903_0244) ytpR 199733..200359 (+) 627 WP_000578323.1 YtpR family tRNA-binding protein -
  W903_RS01200 (W903_0245) - 200413..201129 (-) 717 Protein_182 class I SAM-dependent methyltransferase -
  W903_RS01205 (W903_0246) ssbA 201210..201605 (+) 396 WP_038406053.1 single-stranded DNA-binding protein Machinery gene
  W903_RS01210 (W903_0247) - 201729..202373 (+) 645 WP_000416608.1 HAD family phosphatase -
  W903_RS01215 (W903_0248) - 202400..204145 (+) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  W903_RS01220 (W903_0249) - 204126..204866 (+) 741 WP_000697631.1 LytTR family DNA-binding domain-containing protein -
  W903_RS01225 (W903_0250) - 205036..205491 (+) 456 WP_000683316.1 CidA/LrgA family protein -
  W903_RS01230 (W903_0251) lrgB 205493..206221 (+) 729 WP_000421726.1 antiholin-like protein LrgB -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14838.84 Da        Isoelectric Point: 7.0189

>NTDB_id=114932 W903_RS01205 WP_038406053.1 201210..201605(+) (ssbA) [Streptococcus agalactiae CNCTC 10/84]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETFASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSSDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=114932 W903_RS01205 WP_038406053.1 201210..201605(+) (ssbA) [Streptococcus agalactiae CNCTC 10/84]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCTTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTACGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATTACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTAGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

58.621

88.55

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.763

90.076

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412

Multiple sequence alignment