Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | CKW06_RS18675 | Genome accession | NZ_LT906480 |
| Coordinates | 3943831..3944238 (-) | Length | 135 a.a. |
| NCBI ID | WP_024956772.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain NCTC10257 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3938831..3949238
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKW06_RS18665 (SAMEA4076705_03746) | pilR | 3940375..3941748 (+) | 1374 | WP_005410795.1 | sigma-54 dependent transcriptional regulator | Regulator |
| CKW06_RS18670 (SAMEA4076705_03747) | pilB | 3941874..3943607 (-) | 1734 | WP_024956773.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CKW06_RS18675 (SAMEA4076705_03748) | pilA/pilAI | 3943831..3944238 (-) | 408 | WP_024956772.1 | pilin | Machinery gene |
| CKW06_RS18680 (SAMEA4076705_03749) | - | 3944391..3944828 (-) | 438 | WP_024956771.1 | pilin | - |
| CKW06_RS18685 (SAMEA4076705_03750) | pilC | 3945181..3946440 (+) | 1260 | WP_024956770.1 | type II secretion system F family protein | Machinery gene |
| CKW06_RS18690 (SAMEA4076705_03751) | - | 3946448..3947311 (+) | 864 | WP_012481100.1 | A24 family peptidase | - |
| CKW06_RS18695 (SAMEA4076705_03752) | coaE | 3947323..3947934 (+) | 612 | WP_024956769.1 | dephospho-CoA kinase | - |
| CKW06_RS18700 (SAMEA4076705_03753) | - | 3948194..3948580 (-) | 387 | WP_024956768.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14252.43 Da Isoelectric Point: 6.2109
>NTDB_id=1148079 CKW06_RS18675 WP_024956772.1 3943831..3944238(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain NCTC10257]
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
Nucleotide
Download Length: 408 bp
>NTDB_id=1148079 CKW06_RS18675 WP_024956772.1 3943831..3944238(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain NCTC10257]
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.735 |
100 |
0.511 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.382 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
38.255 |
100 |
0.422 |
| pilA | Acinetobacter baumannii strain A118 |
40.876 |
100 |
0.415 |
| comP | Acinetobacter baylyi ADP1 |
35.57 |
100 |
0.393 |
| pilA | Vibrio cholerae C6706 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae strain A1552 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
34.694 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.842 |
98.519 |
0.363 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
35.507 |
100 |
0.363 |