Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BQ6873_RS14950 Genome accession   NZ_LT671418
Coordinates   3145028..3146260 (-) Length   410 a.a.
NCBI ID   WP_076593358.1    Uniprot ID   -
Organism   Herminiimonas arsenitoxidans strain AS8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3140028..3151260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6873_RS14920 - 3140997..3141872 (+) 876 WP_076593352.1 ATP-binding protein -
  BQ6873_RS14925 - 3141959..3142378 (+) 420 WP_076593353.1 NUDIX domain-containing protein -
  BQ6873_RS14930 yacG 3142389..3142583 (-) 195 WP_076593354.1 DNA gyrase inhibitor YacG -
  BQ6873_RS14935 zapD 3142598..3143353 (-) 756 WP_076593355.1 cell division protein ZapD -
  BQ6873_RS14940 coaE 3143533..3144159 (-) 627 WP_076593356.1 dephospho-CoA kinase -
  BQ6873_RS14945 pilD 3144165..3145025 (-) 861 WP_157889230.1 A24 family peptidase Machinery gene
  BQ6873_RS14950 pilC 3145028..3146260 (-) 1233 WP_076593358.1 type II secretion system F family protein Machinery gene
  BQ6873_RS14955 pilB 3146276..3148003 (-) 1728 WP_076593359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BQ6873_RS14960 ispB 3148217..3149206 (-) 990 WP_076593360.1 octaprenyl diphosphate synthase -
  BQ6873_RS14965 rplU 3149447..3149758 (+) 312 WP_041322652.1 50S ribosomal protein L21 -
  BQ6873_RS14970 rpmA 3149797..3150054 (+) 258 WP_076593361.1 50S ribosomal protein L27 -
  BQ6873_RS14975 cgtA 3150146..3151255 (+) 1110 WP_076593362.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44731.74 Da        Isoelectric Point: 10.0217

>NTDB_id=1145959 BQ6873_RS14950 WP_076593358.1 3145028..3146260(-) (pilC) [Herminiimonas arsenitoxidans strain AS8]
MATSARKVGSTTLAKESVFTWEGKDKSGKIVRGELRAGGESVVNATLRRQGVLVTKVKKKSYRSGKKVSEKDITLFTRQL
ATMMKAGVPLLQSFDIVAKGNDNPSVSKLIQDIRADVETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTLAIKAKIKSAMFYPVSILAVAFIVTAVIMIWVVPAFKDVFKSFGADLPAPTLMVMAISDFFVANWYIIFGVLFAG
LYLFFQSWRRSLKMQRYMDKLLLKTPIFGAVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATKKIQTE
VSTGTSLTVAMQNSDVFPNMVTQMVAIGEESGSLDNMLGKVADFYEEEVDEAVASLSSLMEPLIMVILGVLIGGLVIAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1145959 BQ6873_RS14950 WP_076593358.1 3145028..3146260(-) (pilC) [Herminiimonas arsenitoxidans strain AS8]
ATGGCAACATCAGCACGTAAGGTCGGAAGTACGACGCTCGCCAAAGAGTCTGTTTTCACCTGGGAAGGCAAAGACAAATC
CGGCAAAATCGTGCGCGGCGAATTACGTGCCGGCGGTGAATCGGTTGTCAATGCGACGCTACGCCGCCAAGGCGTGCTGG
TCACCAAGGTTAAAAAGAAAAGCTATCGCAGCGGCAAGAAAGTCTCGGAAAAAGACATCACATTATTCACCCGCCAGCTC
GCCACCATGATGAAGGCTGGTGTACCGCTGCTGCAATCTTTCGATATCGTTGCCAAGGGCAATGACAACCCGTCAGTCTC
CAAGCTGATTCAGGATATACGCGCCGATGTCGAAACTGGTACCAGCCTGAATCAGGCCTTTCGCAAATTCCCGCTCTACT
TCGACCCGCTCTTCTGCAATCTGGTCGGTGCCGGTGAGCAAGCCGGTATTTTGGAAGACTTGCTGACGCGACTCGCGATC
TACAAGGAAAAAACCCTCGCGATCAAAGCCAAGATCAAATCCGCGATGTTCTATCCGGTATCGATTCTGGCAGTCGCCTT
CATCGTGACCGCTGTCATCATGATCTGGGTGGTACCGGCGTTCAAGGATGTATTCAAAAGCTTTGGTGCAGACTTGCCAG
CGCCTACACTGATGGTCATGGCGATTTCAGACTTTTTCGTCGCCAACTGGTACATCATTTTCGGCGTGCTGTTTGCCGGC
CTTTATCTATTCTTCCAATCATGGAGACGCTCGCTGAAGATGCAGCGCTACATGGATAAGCTGCTGCTGAAAACACCGAT
CTTTGGCGCTGTCATACGCAAAGCCACCATAGCGCGCTGGACCCGCACACTGGCCACCATGTTTGCCGCTGGCGTGCCTT
TGGTCGAATCACTGGACTCCGTCGGTGGAGCCGCCGGCAATGCCGTCTATCTCGATGCCACGAAGAAAATTCAAACCGAA
GTCAGCACCGGCACCAGTCTGACTGTCGCGATGCAAAACTCCGATGTCTTCCCAAATATGGTGACGCAGATGGTCGCGAT
CGGTGAAGAATCTGGCTCACTCGATAATATGCTGGGCAAAGTCGCCGACTTCTATGAAGAAGAAGTCGATGAAGCCGTTG
CTTCACTCTCAAGTCTGATGGAACCATTGATCATGGTTATTCTTGGCGTACTGATCGGCGGTCTGGTGATTGCAATGTAT
CTGCCTATTTTCAAATTGGGTTCCGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.388

97.317

0.539
  pilC Acinetobacter baumannii D1279779

53.652

96.829

0.52
  pilC Legionella pneumophila strain ERS1305867

53.535

96.585

0.517
  pilG Neisseria gonorrhoeae MS11

53.015

97.073

0.515
  pilG Neisseria meningitidis 44/76-A

52.764

97.073

0.512
  pilC Acinetobacter baylyi ADP1

52.01

97.073

0.505
  pilC Vibrio campbellii strain DS40M4

40.302

96.829

0.39
  pilC Vibrio cholerae strain A1552

40.05

96.829

0.388
  pilC Thermus thermophilus HB27

36.386

100

0.368

Multiple sequence alignment