Detailed information NTG1145958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BQ6873_RS14945
• Genome accession: NZ_LT671418
• Coordinates: 3144165..3145025 (-)
• Length: 286 a.a.
• NCBI ID: WP_157889230.1
• Uniprot ID: -
• Organism: Herminiimonas arsenitoxidans strain AS8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3139165..3150025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BQ6873_RS14915	argJ	3139713..3140948 (+)	1236	WP_076593351.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
BQ6873_RS14920	-	3140997..3141872 (+)	876	WP_076593352.1	ATP-binding protein	-
BQ6873_RS14925	-	3141959..3142378 (+)	420	WP_076593353.1	NUDIX domain-containing protein	-
BQ6873_RS14930	yacG	3142389..3142583 (-)	195	WP_076593354.1	DNA gyrase inhibitor YacG	-
BQ6873_RS14935	zapD	3142598..3143353 (-)	756	WP_076593355.1	cell division protein ZapD	-
BQ6873_RS14940	coaE	3143533..3144159 (-)	627	WP_076593356.1	dephospho-CoA kinase	-
BQ6873_RS14945	pilD	3144165..3145025 (-)	861	WP_157889230.1	A24 family peptidase	Machinery gene
BQ6873_RS14950	pilC	3145028..3146260 (-)	1233	WP_076593358.1	type II secretion system F family protein	Machinery gene
BQ6873_RS14955	pilB	3146276..3148003 (-)	1728	WP_076593359.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BQ6873_RS14960	ispB	3148217..3149206 (-)	990	WP_076593360.1	octaprenyl diphosphate synthase	-
BQ6873_RS14965	rplU	3149447..3149758 (+)	312	WP_041322652.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 30854.88 Da
• Isoelectric Point: 8.1071

>NTDB_id=1145958 BQ6873_RS14945 WP_157889230.1 3144165..3145025(-) (pilD) [Herminiimonas arsenitoxidans strain AS8]
MDLLWSAPAGSVLPAVIAGVFGLLIGSFLNVVIHRIPKMMQRESDNYVANESGKPLPHEDRYNLVVPRSACPKCGHQITA
LENIPVISYAAIGGKCTACKTPISIRYPIIELLTGLLSAFLIWHFGSGLLGLSTLVFTYLLIAMTFIDADTQLLPDDLTL
PLLWLGLLINLNGTFVPLTEAVIGAAAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPIIILLSSLVGA
IVGIALILLAKRGRDIPIPFGPYLAAAGLLTLLYGKPLAQAYLGFY

Nucleotide

• Length: 861 bp

>NTDB_id=1145958 BQ6873_RS14945 WP_157889230.1 3144165..3145025(-) (pilD) [Herminiimonas arsenitoxidans strain AS8]
ATGGATTTACTCTGGTCTGCCCCTGCGGGCAGCGTATTGCCTGCAGTGATTGCGGGCGTATTTGGCTTGTTGATAGGCAG
CTTTCTCAACGTCGTGATACACCGCATCCCGAAAATGATGCAGCGTGAATCAGACAACTACGTCGCCAATGAAAGCGGCA
AGCCCTTGCCGCATGAGGATCGCTACAATCTGGTCGTGCCACGTTCGGCCTGCCCGAAATGTGGGCATCAGATTACTGCG
CTGGAAAACATTCCCGTCATCAGCTACGCCGCTATCGGCGGCAAATGCACGGCCTGCAAGACACCCATTTCCATCCGCTA
CCCGATCATAGAATTACTGACCGGCTTGCTGTCCGCCTTCCTAATCTGGCATTTCGGTAGTGGCTTGCTTGGACTGAGCA
CCTTGGTCTTTACGTATTTACTGATTGCGATGACCTTCATCGATGCTGATACGCAATTGCTGCCGGATGACCTGACCTTA
CCGCTGTTATGGCTGGGCTTGCTGATCAATCTGAATGGTACCTTCGTCCCGCTCACGGAAGCGGTCATAGGCGCAGCCGC
CGGCTATCTCAGCTTATGGTCGATTTACTGGCTGTTCAAGCTGCTAACCGGCAAAGAAGGCATGGGCTATGGCGACTTCA
AACTATTGGCTGCGCTCGGTGCATGGCTGGGCTGGAAGATGCTTCCCATCATCATTTTGCTATCGTCGCTGGTAGGCGCT
ATTGTTGGCATCGCGCTGATCCTGCTTGCCAAGCGCGGGCGTGATATCCCTATCCCATTCGGCCCTTACCTCGCTGCTGC
AGGCCTGTTGACTTTGCTGTACGGTAAACCGCTGGCACAGGCATATCTCGGCTTTTACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.353	95.105	0.545
pilD	Vibrio campbellii strain DS40M4	54.982	94.755	0.521
pilD	Acinetobacter baumannii D1279779	52.453	92.657	0.486
pilD	Acinetobacter nosocomialis M2	50.185	94.755	0.476
pilD	Neisseria gonorrhoeae MS11	52.362	88.811	0.465