Detailed information NTG1143055

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STN4L_RS08215
• Genome accession: NZ_LS974444
• Coordinates: 1538248..1538640 (+)
• Length: 130 a.a.
• NCBI ID: WP_011226610.1
• Uniprot ID: A0A3G6K2H6
• Organism: Streptococcus thermophilus strain N4L
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1533248..1543640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STN4L_RS08180 (STN4L_01917)	proC	1533451..1534221 (-)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-
STN4L_RS08185 (STN4L_01919)	pepA	1534237..1535303 (-)	1067	Protein_1516	glutamyl aminopeptidase	-
STN4L_RS08190 (STN4L_01920)	-	1535403..1535687 (+)	285	WP_011681678.1	DUF4651 domain-containing protein	-
STN4L_RS08195 (STN4L_01921)	-	1535684..1535998 (+)	315	WP_011226613.1	thioredoxin family protein	-
STN4L_RS08200 (STN4L_01922)	ytpR	1536008..1536631 (+)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
STN4L_RS08205 (STN4L_01923)	-	1536769..1537800 (+)	1032	WP_014622000.1	YeeE/YedE family protein	-
STN4L_RS08210 (STN4L_01924)	-	1537815..1538042 (+)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
STN4L_RS08215 (STN4L_01925)	ssbA	1538248..1538640 (+)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
STN4L_RS08220 (STN4L_01926)	tadA	1539399..1539917 (+)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
STN4L_RS10865 (STN4L_01927)	-	1539998..1540261 (-)	264	WP_014621999.1	hypothetical protein	-
STN4L_RS08230 (STN4L_01928)	-	1540314..1540481 (-)	168	WP_014621998.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STN4L_RS08240 (STN4L_01929)	-	1540850..1541683 (+)	834	WP_014608733.1	putative RNA methyltransferase	-
STN4L_RS10870	-	1541798..1542552 (+)	755	Protein_1527	HAD family hydrolase	-
STN4L_RS08250 (STN4L_01932)	dapD	1542638..1543336 (+)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=1143055 STN4L_RS08215 WP_011226610.1 1538248..1538640(+) (ssbA) [Streptococcus thermophilus strain N4L]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1143055 STN4L_RS08215 WP_011226610.1 1538248..1538640(+) (ssbA) [Streptococcus thermophilus strain N4L]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3G6K2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377