Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQL00_RS04515 Genome accession   NZ_LS483523
Coordinates   832011..832406 (+) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 827011..837406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS04470 - 827158..827520 (+) 363 WP_000078801.1 DUF2200 domain-containing protein -
  DQL00_RS04475 - 827517..827951 (+) 435 WP_023396451.1 phosphatase PAP2 family protein -
  DQL00_RS04480 - 828065..828511 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  DQL00_RS04485 - 828516..829190 (+) 675 WP_000725721.1 LiaF transmembrane domain-containing protein -
  DQL00_RS12435 - 829437..829634 (+) 198 Protein_815 N-acetylmuramoyl-L-alanine amidase family protein -
  DQL00_RS12235 - 829659..829790 (-) 132 WP_001811306.1 hypothetical protein -
  DQL00_RS04495 - 829884..830183 (+) 300 WP_001818001.1 DUF4651 domain-containing protein -
  DQL00_RS04500 - 830180..830497 (+) 318 WP_000615774.1 thioredoxin family protein -
  DQL00_RS04505 ytpR 830513..831139 (+) 627 WP_000578302.1 YtpR family tRNA-binding protein -
  DQL00_RS04510 - 831172..831933 (+) 762 WP_001107757.1 SDR family oxidoreductase -
  DQL00_RS04515 ssbB/cilA 832011..832406 (+) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  DQL00_RS04520 groES 832676..832960 (+) 285 WP_000917330.1 co-chaperone GroES -
  DQL00_RS04525 groL 832976..834598 (+) 1623 WP_000031585.1 chaperonin GroEL -
  DQL00_RS04530 - 834697..835926 (-) 1230 WP_000436324.1 ISL3 family transposase -
  DQL00_RS04535 - 836011..836292 (+) 282 WP_078839683.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=1142959 DQL00_RS04515 WP_000282467.1 832011..832406(+) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6836169]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1142959 DQL00_RS04515 WP_000282467.1 832011..832406(+) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment