Detailed information NTG1141921

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: DQK98_RS09395
• Genome accession: NZ_LS483449
• Coordinates: 1775443..1775838 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282443.1
• Uniprot ID: A0A0E8PDH7
• Organism: Streptococcus pneumoniae strain 4041STDY6836170
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1770443..1780838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQK98_RS09365	-	1770686..1771219 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
DQK98_RS09375	-	1771574..1771780 (-)	207	WP_000775827.1	transcriptional regulator	-
DQK98_RS09380	-	1771940..1773266 (+)	1327	Protein_1748	ISL3 family transposase	-
DQK98_RS09385	groL	1773365..1774987 (-)	1623	WP_000031573.1	chaperonin GroEL	-
DQK98_RS09390	groES	1775003..1775287 (-)	285	WP_000917299.1	co-chaperone GroES	-
DQK98_RS09395	ssbB/cilA	1775443..1775838 (-)	396	WP_000282443.1	single-stranded DNA-binding protein	Machinery gene
DQK98_RS09400	-	1775916..1776677 (-)	762	WP_111688173.1	SDR family NAD(P)-dependent oxidoreductase	-
DQK98_RS09405	ytpR	1776719..1777345 (-)	627	WP_111688174.1	YtpR family tRNA-binding protein	-
DQK98_RS09410	-	1777361..1777678 (-)	318	WP_000615767.1	thioredoxin family protein	-
DQK98_RS09415	-	1777675..1777974 (-)	300	WP_001013974.1	DUF4651 domain-containing protein	-
DQK98_RS11610	-	1778172..1778252 (-)	81	WP_223200442.1	hypothetical protein	-
DQK98_RS09425	-	1778259..1778450 (-)	192	WP_000291826.1	cell wall-binding protein	-
DQK98_RS09430	-	1778611..1779285 (-)	675	WP_050203226.1	LiaF transmembrane domain-containing protein	-
DQK98_RS09435	-	1779291..1779737 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
DQK98_RS09440	-	1779851..1780354 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
DQK98_RS09445	-	1780351..1780713 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14935.91 Da
• Isoelectric Point: 5.9409

>NTDB_id=1141921 DQK98_RS09395 WP_000282443.1 1775443..1775838(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6836170]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1141921 DQK98_RS09395 WP_000282443.1 1775443..1775838(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A0E8PDH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405