Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN75_RS00740 Genome accession   NZ_LS483420
Coordinates   111912..112307 (+) Length   131 a.a.
NCBI ID   WP_111684486.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13739     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 106912..117307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN75_RS00705 - 107778..108086 (+) 309 WP_030126458.1 hypothetical protein -
  DQN75_RS00710 (NCTC13739_00143) proC 108169..108939 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  DQN75_RS00715 (NCTC13739_00144) pepA 108986..110053 (-) 1068 WP_012560390.1 glutamyl aminopeptidase -
  DQN75_RS00725 (NCTC13739_00145) - 110518..110802 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQN75_RS00730 (NCTC13739_00146) - 110799..111116 (+) 318 WP_002986515.1 thioredoxin family protein -
  DQN75_RS00735 (NCTC13739_00147) ytpR 111134..111760 (+) 627 WP_111684484.1 YtpR family tRNA-binding protein -
  DQN75_RS00740 (NCTC13739_00148) ssbA 111912..112307 (+) 396 WP_111684486.1 single-stranded DNA-binding protein Machinery gene
  DQN75_RS00750 (NCTC13739_00149) - 112567..113208 (-) 642 WP_111684490.1 deoxynucleoside kinase -
  DQN75_RS00755 (NCTC13739_00150) dusB 113228..114205 (-) 978 WP_014611938.1 tRNA dihydrouridine synthase DusB -
  DQN75_RS00760 (NCTC13739_00151) hslO 114192..115064 (-) 873 WP_111684492.1 Hsp33 family molecular chaperone HslO -
  DQN75_RS00765 (NCTC13739_00152) rofA 115211..116704 (-) 1494 WP_111684494.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14810.01 Da        Isoelectric Point: 8.8877

>NTDB_id=1140985 DQN75_RS00740 WP_111684486.1 111912..112307(+) (ssbA) [Streptococcus pyogenes strain NCTC13739]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEHTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1140985 DQN75_RS00740 WP_111684486.1 111912..112307(+) (ssbA) [Streptococcus pyogenes strain NCTC13739]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAACATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment