Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQN54_RS09395 Genome accession   NZ_LS483417
Coordinates   1757291..1757686 (-) Length   131 a.a.
NCBI ID   WP_000282443.1    Uniprot ID   A0A0E8PDH7
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1752291..1762686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS09365 (NCTC11902_01798) - 1752602..1753135 (+) 534 WP_000775321.1 DUF402 domain-containing protein -
  DQN54_RS09375 (NCTC11902_01799) - 1753490..1753696 (-) 207 WP_000775827.1 transcriptional regulator -
  DQN54_RS09380 (NCTC11902_01800) - 1753857..1755113 (+) 1257 WP_050229724.1 ISL3 family transposase -
  DQN54_RS09385 (NCTC11902_01801) groL 1755213..1756835 (-) 1623 WP_000031588.1 chaperonin GroEL -
  DQN54_RS09390 (NCTC11902_01802) groES 1756851..1757135 (-) 285 WP_000917340.1 co-chaperone GroES -
  DQN54_RS09395 (NCTC11902_01803) ssbB/cilA 1757291..1757686 (-) 396 WP_000282443.1 single-stranded DNA-binding protein Machinery gene
  DQN54_RS09400 (NCTC11902_01804) - 1757764..1758525 (-) 762 WP_001107752.1 SDR family oxidoreductase -
  DQN54_RS09405 (NCTC11902_01805) ytpR 1758567..1759193 (-) 627 WP_000578286.1 YtpR family tRNA-binding protein -
  DQN54_RS09410 (NCTC11902_01806) - 1759209..1759526 (-) 318 WP_000615776.1 thioredoxin family protein -
  DQN54_RS09415 (NCTC11902_01807) - 1759523..1759822 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  DQN54_RS12040 - 1759916..1760047 (+) 132 WP_001811306.1 hypothetical protein -
  DQN54_RS12265 - 1760159..1760354 (-) 196 Protein_1764 cell wall-binding protein -
  DQN54_RS09425 (NCTC11902_01808) - 1760515..1761189 (-) 675 WP_000725750.1 LiaF transmembrane domain-containing protein -
  DQN54_RS09430 (NCTC11902_01809) - 1761195..1761641 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  DQN54_RS09435 (NCTC11902_01810) - 1761755..1762258 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  DQN54_RS09440 (NCTC11902_01811) - 1762255..1762617 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14935.91 Da        Isoelectric Point: 5.9409

>NTDB_id=1140893 DQN54_RS09395 WP_000282443.1 1757291..1757686(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC11902]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1140893 DQN54_RS09395 WP_000282443.1 1757291..1757686(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC11902]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGGGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E8PDH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment