Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN21_RS00785 Genome accession   NZ_LS483409
Coordinates   115595..115990 (+) Length   131 a.a.
NCBI ID   WP_077495935.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 110595..120990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS00755 (NCTC13773_00150) pepA 111373..112440 (-) 1068 WP_061458778.1 glutamyl aminopeptidase -
  DQN21_RS00760 (NCTC13773_00151) - 112483..112992 (-) 510 WP_061458779.1 GNAT family N-acetyltransferase -
  DQN21_RS00765 (NCTC13773_00152) - 113442..113735 (+) 294 WP_167367601.1 DUF4651 domain-containing protein -
  DQN21_RS00770 (NCTC13773_00153) - 113728..114045 (+) 318 WP_009853246.1 thioredoxin family protein -
  DQN21_RS00775 (NCTC13773_00154) ytpR 114054..114680 (+) 627 WP_061458781.1 YtpR family tRNA-binding protein -
  DQN21_RS00780 (NCTC13773_00155) - 114767..115483 (-) 717 WP_167367602.1 class I SAM-dependent methyltransferase -
  DQN21_RS00785 (NCTC13773_00156) ssbA 115595..115990 (+) 396 WP_077495935.1 single-stranded DNA-binding protein Machinery gene
  DQN21_RS00790 (NCTC13773_00157) - 116140..117183 (+) 1044 WP_077495937.1 YeeE/YedE family protein -
  DQN21_RS00795 (NCTC13773_00158) - 117186..117413 (+) 228 WP_009853252.1 sulfurtransferase TusA family protein -
  DQN21_RS00800 (NCTC13773_00159) - 117541..118347 (+) 807 WP_077495939.1 Cof-type HAD-IIB family hydrolase -
  DQN21_RS00805 (NCTC13773_00160) - 118407..120050 (-) 1644 WP_077495941.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14951.99 Da        Isoelectric Point: 5.7965

>NTDB_id=1140542 DQN21_RS00785 WP_077495935.1 115595..115990(+) (ssbA) [Streptococcus gallolyticus strain NCTC13773]
MYNKVIMIGRLTAQPELVTTSNEKFVTRVTLAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKEGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1140542 DQN21_RS00785 WP_077495935.1 115595..115990(+) (ssbA) [Streptococcus gallolyticus strain NCTC13773]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACGGCGCAGCCTGAGCTTGTGACGACGTCAAATGAGAAATTTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACACTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGAAGGCCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment