Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQN33_RS00910 | Genome accession | NZ_LS483408 |
| Coordinates | 146542..146940 (+) | Length | 132 a.a. |
| NCBI ID | WP_012657691.1 | Uniprot ID | - |
| Organism | Streptococcus uberis strain NCTC4674 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 141542..151940
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN33_RS00900 (NCTC4674_00183) | ytpR | 141749..142375 (+) | 627 | WP_046388923.1 | YtpR family tRNA-binding protein | - |
| DQN33_RS00905 (NCTC4674_00184) | - | 142569..146378 (+) | 3810 | WP_111672973.1 | GH32 C-terminal domain-containing protein | - |
| DQN33_RS00910 (NCTC4674_00185) | ssbA | 146542..146940 (+) | 399 | WP_012657691.1 | single-stranded DNA-binding protein | Machinery gene |
| DQN33_RS00915 (NCTC4674_00186) | - | 147432..148391 (+) | 960 | WP_111672974.1 | ABC transporter substrate-binding protein | - |
| DQN33_RS00920 (NCTC4674_00187) | - | 148408..149370 (+) | 963 | WP_046388460.1 | ABC transporter substrate-binding protein | - |
| DQN33_RS00925 (NCTC4674_00188) | - | 149407..150291 (+) | 885 | WP_046387802.1 | ABC transporter permease | - |
| DQN33_RS00930 (NCTC4674_00189) | - | 150300..151103 (+) | 804 | WP_111672975.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15145.29 Da Isoelectric Point: 5.9467
>NTDB_id=1140490 DQN33_RS00910 WP_012657691.1 146542..146940(+) (ssbA) [Streptococcus uberis strain NCTC4674]
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
Nucleotide
Download Length: 399 bp
>NTDB_id=1140490 DQN33_RS00910 WP_012657691.1 146542..146940(+) (ssbA) [Streptococcus uberis strain NCTC4674]
ATGTATAATAAAGTAATTCTTATAGGACGTTTAGTGGCTAATCCTGAACTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAGAGCCGTGCTCA
AAGGGCTATGCGTGAAAATAACATGACTGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAAGAGCTTCCTTTTTAA
ATGTATAATAAAGTAATTCTTATAGGACGTTTAGTGGCTAATCCTGAACTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAGAGCCGTGCTCA
AAGGGCTATGCGTGAAAATAACATGACTGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAAGAGCTTCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
75.758 |
100 |
0.758 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
68.939 |
100 |
0.689 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus mitis SK321 |
68.182 |
100 |
0.682 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.143 |
84.848 |
0.485 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.133 |
85.606 |
0.386 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.283 |
80.303 |
0.364 |