Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN23_RS00800 Genome accession   NZ_LS483403
Coordinates   116870..117265 (+) Length   131 a.a.
NCBI ID   WP_020916006.1    Uniprot ID   A0AB33AJI7
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 111193..119748 116870..117265 within 0
IScluster/Tn 117405..119748 116870..117265 flank 140


Gene organization within MGE regions


Location: 111193..119748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS00750 (NCTC13774_00151) - 111193..111390 (+) 198 WP_020915996.1 helix-turn-helix transcriptional regulator -
  DQN23_RS00755 (NCTC13774_00152) - 111407..111607 (+) 201 WP_058814360.1 hypothetical protein -
  DQN23_RS00760 (NCTC13774_00153) - 111608..112063 (+) 456 WP_231853254.1 ABC transporter permease -
  DQN23_RS00765 (NCTC13774_00154) - 112078..112713 (+) 636 WP_111712559.1 CPBP family intramembrane glutamic endopeptidase -
  DQN23_RS00770 (NCTC13774_00155) proC 112750..113520 (-) 771 WP_020916000.1 pyrroline-5-carboxylate reductase -
  DQN23_RS00775 (NCTC13774_00156) pepA 113582..114649 (-) 1068 WP_111712560.1 glutamyl aminopeptidase -
  DQN23_RS00780 (NCTC13774_00157) - 114767..115060 (+) 294 WP_043894886.1 DUF4651 domain-containing protein -
  DQN23_RS00785 (NCTC13774_00158) - 115053..115370 (+) 318 WP_058833292.1 thioredoxin family protein -
  DQN23_RS00790 (NCTC13774_00159) ytpR 115379..116005 (+) 627 WP_111712561.1 YtpR family tRNA-binding protein -
  DQN23_RS00795 (NCTC13774_00160) - 116042..116758 (-) 717 WP_020916005.1 class I SAM-dependent methyltransferase -
  DQN23_RS00800 (NCTC13774_00161) ssbA 116870..117265 (+) 396 WP_020916006.1 single-stranded DNA-binding protein Machinery gene
  DQN23_RS00805 (NCTC13774_00162) - 117405..117482 (+) 78 Protein_104 IS6 family transposase -
  DQN23_RS00810 (NCTC13774_00163) - 117601..118899 (-) 1299 WP_014334220.1 polysaccharide deacetylase family protein -
  DQN23_RS00815 (NCTC13774_00164) - 119068..119748 (+) 681 WP_043894889.1 IS6 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14805.80 Da        Isoelectric Point: 5.2678

>NTDB_id=1140330 DQN23_RS00800 WP_020916006.1 116870..117265(+) (ssbA) [Streptococcus lutetiensis strain NCTC13774]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGSLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1140330 DQN23_RS00800 WP_020916006.1 116870..117265(+) (ssbA) [Streptococcus lutetiensis strain NCTC13774]
ATGTATAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGAGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGACTTAGTTTTAGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment