Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN61_RS00745 Genome accession   NZ_LS483391
Coordinates   113284..113679 (+) Length   131 a.a.
NCBI ID   WP_011017257.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108284..118679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN61_RS00710 (NCTC8320_00144) proC 108454..109224 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  DQN61_RS00715 (NCTC8320_00145) pepA 109272..110339 (-) 1068 WP_011017252.1 glutamyl aminopeptidase -
  DQN61_RS00725 (NCTC8320_00146) - 110875..111876 (+) 1002 WP_011017253.1 IS30-like element IS1239 family transposase -
  DQN61_RS00730 (NCTC8320_00147) - 111890..112174 (+) 285 WP_011017254.1 DUF4651 domain-containing protein -
  DQN61_RS00735 (NCTC8320_00148) - 112171..112509 (+) 339 WP_011017255.1 thioredoxin family protein -
  DQN61_RS00740 (NCTC8320_00149) ytpR 112506..113132 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  DQN61_RS00745 (NCTC8320_00150) ssbA 113284..113679 (+) 396 WP_011017257.1 single-stranded DNA-binding protein Machinery gene
  DQN61_RS00750 (NCTC8320_00151) - 113934..114575 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  DQN61_RS00755 (NCTC8320_00152) dusB 114595..115572 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  DQN61_RS00760 (NCTC8320_00153) hslO 115559..116431 (-) 873 WP_002986499.1 Hsp33 family molecular chaperone HslO -
  DQN61_RS00765 nra 116557..118092 (-) 1536 Protein_101 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14729.92 Da        Isoelectric Point: 8.8846

>NTDB_id=1139965 DQN61_RS00745 WP_011017257.1 113284..113679(+) (ssbA) [Streptococcus pyogenes strain NCTC8320]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREAGFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1139965 DQN61_RS00745 WP_011017257.1 113284..113679(+) (ssbA) [Streptococcus pyogenes strain NCTC8320]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGGTTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTCCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment