Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | DQM93_RS09075 | Genome accession | NZ_LS483390 |
| Coordinates | 1705849..1706244 (-) | Length | 131 a.a. |
| NCBI ID | WP_000282467.1 | Uniprot ID | A0A098Z0L0 |
| Organism | Streptococcus pneumoniae strain NCTC13276 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1700849..1711244
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM93_RS09050 (NCTC13276_01736) | - | 1701190..1701723 (+) | 534 | WP_000775321.1 | DUF402 domain-containing protein | - |
| DQM93_RS09055 (NCTC13276_01737) | - | 1702077..1702283 (-) | 207 | WP_000775827.1 | transcriptional regulator | - |
| DQM93_RS09060 (NCTC13276_01738) | - | 1702443..1703672 (+) | 1230 | WP_000436473.1 | ISL3 family transposase | - |
| DQM93_RS09065 (NCTC13276_01739) | groL | 1703771..1705393 (-) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| DQM93_RS09070 (NCTC13276_01740) | groES | 1705409..1705693 (-) | 285 | WP_000917304.1 | co-chaperone GroES | - |
| DQM93_RS09075 (NCTC13276_01741) | ssbB/cilA | 1705849..1706244 (-) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM93_RS09080 (NCTC13276_01742) | - | 1706322..1707083 (-) | 762 | WP_001107755.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| DQM93_RS09085 (NCTC13276_01743) | ytpR | 1707116..1707742 (-) | 627 | WP_000578309.1 | YtpR family tRNA-binding protein | - |
| DQM93_RS09090 (NCTC13276_01744) | - | 1707758..1708075 (-) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| DQM93_RS09095 (NCTC13276_01745) | - | 1708072..1708371 (-) | 300 | WP_001013974.1 | DUF4651 domain-containing protein | - |
| DQM93_RS11710 | - | 1708465..1708596 (+) | 132 | WP_001811306.1 | hypothetical protein | - |
| DQM93_RS11530 | - | 1708621..1708683 (-) | 63 | WP_219300018.1 | hypothetical protein | - |
| DQM93_RS09100 | - | 1708708..1708899 (-) | 192 | WP_000291826.1 | cell wall-binding protein | - |
| DQM93_RS09105 (NCTC13276_01746) | - | 1709060..1709734 (-) | 675 | WP_000725742.1 | LiaF transmembrane domain-containing protein | - |
| DQM93_RS09110 (NCTC13276_01747) | - | 1709740..1710186 (-) | 447 | WP_000776587.1 | LytTR family DNA-binding domain-containing protein | - |
| DQM93_RS09115 (NCTC13276_01748) | - | 1710300..1710803 (-) | 504 | WP_000800927.1 | phosphatase PAP2 family protein | - |
| DQM93_RS09120 (NCTC13276_01749) | - | 1710800..1711162 (-) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409
>NTDB_id=1139924 DQM93_RS09075 WP_000282467.1 1705849..1706244(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC13276]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1139924 DQM93_RS09075 WP_000282467.1 1705849..1706244(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC13276]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.473 |
100 |
0.985 |
| ssbA | Streptococcus mutans UA159 |
74.809 |
100 |
0.748 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |