Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQM64_RS01190 | Genome accession | NZ_LS483387 |
| Coordinates | 203088..203483 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain NCTC8187 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 198088..208483
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM64_RS01155 (NCTC8187_00228) | proC | 198482..199252 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| DQM64_RS01160 (NCTC8187_00229) | pepA | 199322..200389 (-) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
| DQM64_RS01165 (NCTC8187_00230) | - | 200574..200813 (-) | 240 | WP_000660180.1 | hypothetical protein | - |
| DQM64_RS01170 (NCTC8187_00231) | - | 200974..201258 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| DQM64_RS01175 (NCTC8187_00232) | - | 201255..201578 (+) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| DQM64_RS01180 (NCTC8187_00233) | ytpR | 201611..202237 (+) | 627 | WP_000578328.1 | YtpR family tRNA-binding protein | - |
| DQM64_RS01185 (NCTC8187_00234) | - | 202291..203007 (-) | 717 | WP_000186185.1 | class I SAM-dependent methyltransferase | - |
| DQM64_RS01190 (NCTC8187_00235) | ssbA | 203088..203483 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM64_RS01195 (NCTC8187_00236) | - | 203607..204251 (+) | 645 | WP_000416612.1 | HAD family hydrolase | - |
| DQM64_RS01200 (NCTC8187_00237) | - | 204278..206023 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| DQM64_RS01205 (NCTC8187_00238) | - | 206004..206744 (+) | 741 | WP_000697630.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| DQM64_RS01210 (NCTC8187_00239) | - | 206914..207369 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| DQM64_RS01215 (NCTC8187_00240) | lrgB | 207371..208099 (+) | 729 | WP_000421726.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=1139735 DQM64_RS01190 WP_000282447.1 203088..203483(+) (ssbA) [Streptococcus agalactiae strain NCTC8187]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1139735 DQM64_RS01190 WP_000282447.1 203088..203483(+) (ssbA) [Streptococcus agalactiae strain NCTC8187]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |