Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQM67_RS00905 Genome accession   NZ_LS483383
Coordinates   146338..146733 (+) Length   131 a.a.
NCBI ID   WP_005591249.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141338..151733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS00875 (NCTC12479_00164) - 141407..142891 (-) 1485 WP_005591255.1 DUF1846 domain-containing protein -
  DQM67_RS00880 (NCTC12479_00165) pepA 143011..144075 (-) 1065 WP_005591254.1 glutamyl aminopeptidase -
  DQM67_RS00885 (NCTC12479_00166) - 144202..144486 (+) 285 WP_005591253.1 DUF4651 domain-containing protein -
  DQM67_RS00890 (NCTC12479_00167) - 144486..144800 (+) 315 WP_005591252.1 thioredoxin family protein -
  DQM67_RS00895 (NCTC12479_00168) ytpR 144831..145457 (+) 627 WP_005591251.1 YtpR family tRNA-binding protein -
  DQM67_RS00900 (NCTC12479_00169) - 145499..146260 (+) 762 WP_037586376.1 SDR family NAD(P)-dependent oxidoreductase -
  DQM67_RS00905 (NCTC12479_00170) ssbB/cilA 146338..146733 (+) 396 WP_005591249.1 single-stranded DNA-binding protein Machinery gene
  DQM67_RS10345 (NCTC12479_00171) - 147027..147167 (+) 141 WP_005591248.1 hypothetical protein -
  DQM67_RS00910 (NCTC12479_00172) - 147441..149660 (+) 2220 WP_005592469.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DQM67_RS00915 (NCTC12479_00173) dtd 149708..150151 (+) 444 WP_005591246.1 D-aminoacyl-tRNA deacylase -
  DQM67_RS00920 (NCTC12479_00174) - 150509..151099 (+) 591 WP_005592451.1 CDP-archaeol synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14702.56 Da        Isoelectric Point: 6.4772

>NTDB_id=1139483 DQM67_RS00905 WP_005591249.1 146338..146733(+) (ssbB/cilA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MYNKVILIGRLTATPELHKTANDKSVARATVAVNRRYKSQNGEREADFINLVVWGRLAETLASYASKGSLISLDGELRSR
RYEKDGTTHYVTEVLCSGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1139483 DQM67_RS00905 WP_005591249.1 146338..146733(+) (ssbB/cilA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGTATAATAAAGTTATTCTGATCGGTCGGTTGACGGCTACACCAGAGTTACACAAGACAGCGAATGACAAGTCGGTCGC
GCGTGCGACAGTGGCGGTGAATCGCCGTTATAAGAGTCAAAATGGAGAGCGTGAAGCGGATTTTATCAACCTTGTTGTCT
GGGGGCGCTTGGCTGAAACCTTGGCAAGTTACGCTAGTAAGGGGAGTTTGATTTCTCTGGACGGAGAATTGCGGAGCCGC
CGCTATGAAAAGGATGGAACCACTCATTATGTGACAGAAGTTCTTTGCAGTGGTTTTCAGCTTTTAGAAAGCCGAGCCCA
GAGAGCACTCCGTGAGAATAATACTGGAGCAGATCTAGCAGATTTGGTGCTGGAAGAGGAGGAACTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

84.733

100

0.847
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

82.443

100

0.824
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397

Multiple sequence alignment