Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM75_RS09280 Genome accession   NZ_LS483380
Coordinates   1945915..1946310 (-) Length   131 a.a.
NCBI ID   WP_012678670.1    Uniprot ID   A0A7Z9D3W7
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1940915..1951310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS09260 (NCTC11824_01860) - 1941705..1942508 (-) 804 WP_012678666.1 ABC transporter ATP-binding protein -
  DQM75_RS09265 (NCTC11824_01861) - 1942517..1943401 (-) 885 WP_014623619.1 ABC transporter permease -
  DQM75_RS09270 (NCTC11824_01862) - 1943508..1944470 (-) 963 WP_111692829.1 ABC transporter substrate-binding protein -
  DQM75_RS09275 (NCTC11824_01863) - 1944497..1945462 (-) 966 WP_012678669.1 ABC transporter substrate-binding protein -
  DQM75_RS09280 (NCTC11824_01864) ssbA 1945915..1946310 (-) 396 WP_012678670.1 single-stranded DNA-binding protein Machinery gene
  DQM75_RS09285 (NCTC11824_01865) - 1946422..1947135 (+) 714 WP_111692830.1 class I SAM-dependent methyltransferase -
  DQM75_RS09290 (NCTC11824_01866) ytpR 1947432..1948058 (-) 627 WP_111692831.1 YtpR family tRNA-binding protein -
  DQM75_RS09295 (NCTC11824_01867) - 1948073..1948390 (-) 318 WP_111692832.1 thioredoxin family protein -
  DQM75_RS09300 (NCTC11824_01868) - 1948387..1948671 (-) 285 WP_228274146.1 DUF4651 domain-containing protein -
  DQM75_RS09305 (NCTC11824_01869) pepA 1949078..1950145 (+) 1068 WP_111692834.1 glutamyl aminopeptidase -
  DQM75_RS09310 (NCTC11824_01870) proC 1950229..1951002 (+) 774 WP_111692835.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14768.92 Da        Isoelectric Point: 8.9315

>NTDB_id=1139363 DQM75_RS09280 WP_012678670.1 1945915..1946310(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1139363 DQM75_RS09280 WP_012678670.1 1945915..1946310(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z9D3W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment